757 research outputs found
Data Mining-based Fragmentation of XML Data Warehouses
With the multiplication of XML data sources, many XML data warehouse models
have been proposed to handle data heterogeneity and complexity in a way
relational data warehouses fail to achieve. However, XML-native database
systems currently suffer from limited performances, both in terms of manageable
data volume and response time. Fragmentation helps address both these issues.
Derived horizontal fragmentation is typically used in relational data
warehouses and can definitely be adapted to the XML context. However, the
number of fragments produced by classical algorithms is difficult to control.
In this paper, we propose the use of a k-means-based fragmentation approach
that allows to master the number of fragments through its parameter. We
experimentally compare its efficiency to classical derived horizontal
fragmentation algorithms adapted to XML data warehouses and show its
superiority
XML-based approaches for the integration of heterogeneous bio-molecular data
Background: The today's public database infrastructure spans a very large collection of heterogeneous biological data, opening new opportunities for molecular biology, bio-medical and bioinformatics research, but raising also new problems for their integration and computational processing. Results: In this paper we survey the most interesting and novel approaches for the representation, integration and management of different kinds of biological data by exploiting XML and the related recommendations and approaches. Moreover, we present new and interesting cutting edge approaches for the appropriate management of heterogeneous biological data represented through XML. Conclusion: XML has succeeded in the integration of heterogeneous biomolecular information, and has established itself as the syntactic glue for biological data sources. Nevertheless, a large variety of XML-based data formats have been proposed, thus resulting in a difficult effective integration of bioinformatics data schemes. The adoption of a few semantic-rich standard formats is urgent to achieve a seamless integration of the current biological resources. </p
Provenance-Aware Sensor Data Storage
Sensor network data has both historical and realtime value. Making historical sensor data useful, in particular, requires storage, naming, and indexing. Sensor data presents new challenges in these areas. Such data is location-specific but also distributed; it is collected in a particular physical location and may be most useful there, but it has additional value when combined with other sensor data collections in a larger distributed system. Thus, arranging location-sensitive peer-to-peer storage is one challenge. Sensor data sets do not have obvious names, so naming them in a globally useful fashion is another challenge. The last challenge arises from the need to index these sensor data sets to make them searchable. The key to sensor data identity is provenance, the full history or lineage of the data. We show how provenance addresses the naming and indexing issues and then present a
research agenda for constructing distributed, indexed repositories of sensor data.Engineering and Applied Science
Framework for Interoperable and Distributed Extraction-Transformation-Loading (ETL) Based on Service Oriented Architecture
Extraction. Transformation and Loading (ETL) are the major functionalities in data warehouse (DW) solutions. Lack of component distribution and interoperability is a gap that leads to many problems in the ETL domain, which is due to tightly-coupled components in the current ETL framework. This research discusses how to distribute the Extraction, Transformation and Loading components so as to achieve distribution and interoperability of these ETL components. In addition, it shows how the ETL framework can be extended. To achieve that, Service Oriented Architecture (SOA) is
adopted to address the mentioned missing features of distribution and interoperability by restructuring the current ETL framework. This research contributes towards the field of ETL by adding the distribution and inter-
operability concepts to the ETL framework. This Ieads to contributions towards the area of data warehousing and business intelligence, because ETL is a core concept in this area. The Design Science Approach (DSA) and Scrum methodologies were adopted for achieving the research goals. The integration of DSA and Scrum provides the
suitable methods for achieving the research objectives. The new ETL framework is realized by developing and testing a prototype that is based on the new ETL framework. This prototype is successfully evaluated using three case studies that are conducted using the data and tools of three different organizations. These organizations use data warehouse solutions for the purpose of generating statistical reports that help their top management to take decisions. Results of the case studies show that distribution and interoperability can be achieved by using the new ETL framework
Time Series Management Systems:A Survey
The collection of time series data increases as more monitoring and
automation are being deployed. These deployments range in scale from an
Internet of things (IoT) device located in a household to enormous distributed
Cyber-Physical Systems (CPSs) producing large volumes of data at high velocity.
To store and analyze these vast amounts of data, specialized Time Series
Management Systems (TSMSs) have been developed to overcome the limitations of
general purpose Database Management Systems (DBMSs) for times series
management. In this paper, we present a thorough analysis and classification of
TSMSs developed through academic or industrial research and documented through
publications. Our classification is organized into categories based on the
architectures observed during our analysis. In addition, we provide an overview
of each system with a focus on the motivational use case that drove the
development of the system, the functionality for storage and querying of time
series a system implements, the components the system is composed of, and the
capabilities of each system with regard to Stream Processing and Approximate
Query Processing (AQP). Last, we provide a summary of research directions
proposed by other researchers in the field and present our vision for a next
generation TSMS.Comment: 20 Pages, 15 Figures, 2 Tables, Accepted for publication in IEEE TKD
BitTorious volunteer: server-side extensions for centrally-managed volunteer storage in BitTorrent swarms
abstract: Background
Our publication of the BitTorious portal [1] demonstrated the ability to create a privatized distributed data warehouse of sufficient magnitude for real-world bioinformatics studies using minimal changes to the standard BitTorrent tracker protocol. In this second phase, we release a new server-side specification to accept anonymous philantropic storage donations by the general public, wherein a small portion of each user’s local disk may be used for archival of scientific data. We have implementated the server-side announcement and control portions of this BitTorrent extension into v3.0.0 of the BitTorious portal, upon which compatible clients may be built.
Results
Automated test cases for the BitTorious Volunteer extensions have been added to the portal’s v3.0.0 release, supporting validation of the “peer affinity” concept and announcement protocol introduced by this specification. Additionally, a separate reference implementation of affinity calculation has been provided in C++ for informaticians wishing to integrate into libtorrent-based projects.
Conclusions
The BitTorrent “affinity” extensions as provided in the BitTorious portal reference implementation allow data publishers to crowdsource the extreme storage prerequisites for research in “big data” fields. With sufficient awareness and adoption of BitTorious Volunteer-based clients by the general public, the BitTorious portal may be able to provide peta-scale storage resources to the scientific community at relatively insignificant financial cost.The electronic version of this article is the complete one and can be found online at: https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-015-0779-
Spatial Data Mining Analytical Environment for Large Scale Geospatial Data
Nowadays, many applications are continuously generating large-scale geospatial data. Vehicle GPS tracking data, aerial surveillance drones, LiDAR (Light Detection and Ranging), world-wide spatial networks, and high resolution optical or Synthetic Aperture Radar imagery data all generate a huge amount of geospatial data. However, as data collection increases our ability to process this large-scale geospatial data in a flexible fashion is still limited. We propose a framework for processing and analyzing large-scale geospatial and environmental data using a “Big Data” infrastructure. Existing Big Data solutions do not include a specific mechanism to analyze large-scale geospatial data. In this work, we extend HBase with Spatial Index(R-Tree) and HDFS to support geospatial data and demonstrate its analytical use with some common geospatial data types and data mining technology provided by the R language. The resulting framework has a robust capability to analyze large-scale geospatial data using spatial data mining and making its outputs available to end users
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