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    Advanced Knowledge Technologies at the Midterm: Tools and Methods for the Semantic Web

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    The University of Edinburgh and research sponsors are authorised to reproduce and distribute reprints and on-line copies for their purposes notwithstanding any copyright annotation hereon. The views and conclusions contained herein are the author’s and shouldn’t be interpreted as necessarily representing the official policies or endorsements, either expressed or implied, of other parties.In a celebrated essay on the new electronic media, Marshall McLuhan wrote in 1962:Our private senses are not closed systems but are endlessly translated into each other in that experience which we call consciousness. Our extended senses, tools, technologies, through the ages, have been closed systems incapable of interplay or collective awareness. Now, in the electric age, the very instantaneous nature of co-existence among our technological instruments has created a crisis quite new in human history. Our extended faculties and senses now constitute a single field of experience which demands that they become collectively conscious. Our technologies, like our private senses, now demand an interplay and ratio that makes rational co-existence possible. As long as our technologies were as slow as the wheel or the alphabet or money, the fact that they were separate, closed systems was socially and psychically supportable. This is not true now when sight and sound and movement are simultaneous and global in extent. (McLuhan 1962, p.5, emphasis in original)Over forty years later, the seamless interplay that McLuhan demanded between our technologies is still barely visible. McLuhan’s predictions of the spread, and increased importance, of electronic media have of course been borne out, and the worlds of business, science and knowledge storage and transfer have been revolutionised. Yet the integration of electronic systems as open systems remains in its infancy.Advanced Knowledge Technologies (AKT) aims to address this problem, to create a view of knowledge and its management across its lifecycle, to research and create the services and technologies that such unification will require. Half way through its sixyear span, the results are beginning to come through, and this paper will explore some of the services, technologies and methodologies that have been developed. We hope to give a sense in this paper of the potential for the next three years, to discuss the insights and lessons learnt in the first phase of the project, to articulate the challenges and issues that remain.The WWW provided the original context that made the AKT approach to knowledge management (KM) possible. AKT was initially proposed in 1999, it brought together an interdisciplinary consortium with the technological breadth and complementarity to create the conditions for a unified approach to knowledge across its lifecycle. The combination of this expertise, and the time and space afforded the consortium by the IRC structure, suggested the opportunity for a concerted effort to develop an approach to advanced knowledge technologies, based on the WWW as a basic infrastructure.The technological context of AKT altered for the better in the short period between the development of the proposal and the beginning of the project itself with the development of the semantic web (SW), which foresaw much more intelligent manipulation and querying of knowledge. The opportunities that the SW provided for e.g., more intelligent retrieval, put AKT in the centre of information technology innovation and knowledge management services; the AKT skill set would clearly be central for the exploitation of those opportunities.The SW, as an extension of the WWW, provides an interesting set of constraints to the knowledge management services AKT tries to provide. As a medium for the semantically-informed coordination of information, it has suggested a number of ways in which the objectives of AKT can be achieved, most obviously through the provision of knowledge management services delivered over the web as opposed to the creation and provision of technologies to manage knowledge.AKT is working on the assumption that many web services will be developed and provided for users. The KM problem in the near future will be one of deciding which services are needed and of coordinating them. Many of these services will be largely or entirely legacies of the WWW, and so the capabilities of the services will vary. As well as providing useful KM services in their own right, AKT will be aiming to exploit this opportunity, by reasoning over services, brokering between them, and providing essential meta-services for SW knowledge service management.Ontologies will be a crucial tool for the SW. The AKT consortium brings a lot of expertise on ontologies together, and ontologies were always going to be a key part of the strategy. All kinds of knowledge sharing and transfer activities will be mediated by ontologies, and ontology management will be an important enabling task. Different applications will need to cope with inconsistent ontologies, or with the problems that will follow the automatic creation of ontologies (e.g. merging of pre-existing ontologies to create a third). Ontology mapping, and the elimination of conflicts of reference, will be important tasks. All of these issues are discussed along with our proposed technologies.Similarly, specifications of tasks will be used for the deployment of knowledge services over the SW, but in general it cannot be expected that in the medium term there will be standards for task (or service) specifications. The brokering metaservices that are envisaged will have to deal with this heterogeneity.The emerging picture of the SW is one of great opportunity but it will not be a wellordered, certain or consistent environment. It will comprise many repositories of legacy data, outdated and inconsistent stores, and requirements for common understandings across divergent formalisms. There is clearly a role for standards to play to bring much of this context together; AKT is playing a significant role in these efforts. But standards take time to emerge, they take political power to enforce, and they have been known to stifle innovation (in the short term). AKT is keen to understand the balance between principled inference and statistical processing of web content. Logical inference on the Web is tough. Complex queries using traditional AI inference methods bring most distributed computer systems to their knees. Do we set up semantically well-behaved areas of the Web? Is any part of the Web in which semantic hygiene prevails interesting enough to reason in? These and many other questions need to be addressed if we are to provide effective knowledge technologies for our content on the web

    A Parallel Iterative Method for Computing Molecular Absorption Spectra

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    We describe a fast parallel iterative method for computing molecular absorption spectra within TDDFT linear response and using the LCAO method. We use a local basis of "dominant products" to parametrize the space of orbital products that occur in the LCAO approach. In this basis, the dynamical polarizability is computed iteratively within an appropriate Krylov subspace. The iterative procedure uses a a matrix-free GMRES method to determine the (interacting) density response. The resulting code is about one order of magnitude faster than our previous full-matrix method. This acceleration makes the speed of our TDDFT code comparable with codes based on Casida's equation. The implementation of our method uses hybrid MPI and OpenMP parallelization in which load balancing and memory access are optimized. To validate our approach and to establish benchmarks, we compute spectra of large molecules on various types of parallel machines. The methods developed here are fairly general and we believe they will find useful applications in molecular physics/chemistry, even for problems that are beyond TDDFT, such as organic semiconductors, particularly in photovoltaics.Comment: 20 pages, 17 figures, 3 table

    A Sequentially Consistent Multiprocessor Architecture for Out-of-Order Retirement of Instructions

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    Out-of-order retirement of instructions has been shown to be an effective technique to increase the number of in-flight instructions. This form of runtime scheduling can reduce pipeline stalls caused by head-of-line blocking effects in the reorder buffer (ROB). Expanding the width of the instruction window can be highly beneficial to multiprocessors that implement a strict memory model, especially when both loads and stores encounter long latencies due to cache misses, and whose stalls must be overlapped with instruction execution to overcome the memory latencies. Based on the Validation Buffer (VB) architecture (a previously proposed out- of-order retirement, checkpoint-free architecture for single processors), this paper proposes a cost-effective, scalable, out-of-order retirement multiprocessor, capable of enforcing sequential consistency without impacting the design of the memory hierarchy or interconnect. Our simulation results indicate that utilizing a VB can speed up both relaxed and sequentially consistent in-order retirement in future multiprocessor systems by between 3 and 20 percent, depending on the ROB size.Ubal Tena, R.; Sahuquillo Borrás, J.; Petit Martí, SV.; López Rodríguez, PJ.; Kaeli, D. (2012). A Sequentially Consistent Multiprocessor Architecture for Out-of-Order Retirement of Instructions. IEEE Transactions on Parallel and Distributed Systems. 23(8):1361-1368. doi:10.1109/TPDS.2011.255S1361136823

    Inductive diagrams for causal reasoning

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    The Lamport diagram is a pervasive and intuitive tool for informal reasoning about causality in a concurrent system. However, traditional axiomatic formalizations of Lamport diagrams can be painful to work with in a mechanized setting like Agda, whereas inductively-defined data would enjoy structural induction and automatic normalization. We propose an alternative, inductive formalization -- the causal separation diagram (CSD) -- that takes inspiration from string diagrams and concurrent separation logic. CSDs enjoy a graphical syntax similar to Lamport diagrams, and can be given compositional semantics in a variety of domains. We demonstrate the utility of CSDs by applying them to logical clocks -- widely-used mechanisms for reifying causal relationships as data -- yielding a generic proof of Lamport's clock condition that is parametric in a choice of clock. We instantiate this proof on Lamport's scalar clock, on Mattern's vector clock, and on the matrix clocks of Raynal et al. and of Wuu and Bernstein, yielding verified implementations of each. Our results and general framework are mechanized in the Agda proof assistant

    Parallel Selective Algorithms for Big Data Optimization

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    We propose a decomposition framework for the parallel optimization of the sum of a differentiable (possibly nonconvex) function and a (block) separable nonsmooth, convex one. The latter term is usually employed to enforce structure in the solution, typically sparsity. Our framework is very flexible and includes both fully parallel Jacobi schemes and Gauss- Seidel (i.e., sequential) ones, as well as virtually all possibilities "in between" with only a subset of variables updated at each iteration. Our theoretical convergence results improve on existing ones, and numerical results on LASSO, logistic regression, and some nonconvex quadratic problems show that the new method consistently outperforms existing algorithms.Comment: This work is an extended version of the conference paper that has been presented at IEEE ICASSP'14. The first and the second author contributed equally to the paper. This revised version contains new numerical results on non convex quadratic problem
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