612 research outputs found
Bilaplacian reconstruction of point clouds
A key process of the geometry processing pipeline is the reconstruction of surfaces from point clouds. The traditional problem addressed by surface reconstruction is to recover the digital representation of the shape that has been inputted, where the data could potentially contain a wide variety of drawbacks. The goal of this thesis would be to test the Bilaplacian Smoothness in order to enforce the smooth prior to the surface reconstruction. By considering our thesis goal we will build an application that not only will solve different sparse linear systems of equations using different possible methods for position, normal, and smoothness equation's constraints but also will make use of more complex and effective surface reconstruction solving techniques such as the multigrid or quadree reconstruction
Greedy low-rank algorithm for spatial connectome regression
Recovering brain connectivity from tract tracing data is an important
computational problem in the neurosciences. Mesoscopic connectome
reconstruction was previously formulated as a structured matrix regression
problem (Harris et al., 2016), but existing techniques do not scale to the
whole-brain setting. The corresponding matrix equation is challenging to solve
due to large scale, ill-conditioning, and a general form that lacks a
convergent splitting. We propose a greedy low-rank algorithm for connectome
reconstruction problem in very high dimensions. The algorithm approximates the
solution by a sequence of rank-one updates which exploit the sparse and
positive definite problem structure. This algorithm was described previously
(Kressner and Sirkovi\'c, 2015) but never implemented for this connectome
problem, leading to a number of challenges. We have had to design judicious
stopping criteria and employ efficient solvers for the three main sub-problems
of the algorithm, including an efficient GPU implementation that alleviates the
main bottleneck for large datasets. The performance of the method is evaluated
on three examples: an artificial "toy" dataset and two whole-cortex instances
using data from the Allen Mouse Brain Connectivity Atlas. We find that the
method is significantly faster than previous methods and that moderate ranks
offer good approximation. This speedup allows for the estimation of
increasingly large-scale connectomes across taxa as these data become available
from tracing experiments. The data and code are available online
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