Brain computer interfaces: an engineering view. Design, implementation and test of a SSVEP-based BCI.

This thesis presents the realization of a compact, yet flexible BCI platform, which, when compared to most commercially-available solution, can offer an optimal trade-off between the following requirements: (i) minimal, easy experimental setup; (ii) flexibility, allowing simultaneous studies on other bio-potentials; (iii) cost effectiveness (e.g. < 1000 €); (iv) robust design, suitable for operation outside lab environments. The thesis encompasses all the project phases, from hardware design and realization, up to software and signal processing. The work started from the development of the hardware acquisition unit. It resulted in a compact, battery-operated module, whose medium-to-large scale production costs are in the range of 300 €. The module features 16 input channels and can be used to acquire different bio-potentials, including EEG, EMG, ECG. Module performance is very good (RTI noise < 1.3 uVpp), and was favourably compared against a commercial device (g.tec USBamp). The device was integrated into an ad-hoc developed Matlab-based platform, which handles the hardware control, as well as the data streaming, logging and processing. Via a specifically developed plug-in, incoming data can also be streamed to a TOBI-interface compatible system. As a demonstrator, the BCI was developed for AAL (Ambient Assisted Living) system-control purposes, having in mind the following requirements: (i) online, self-paced BCI operation (i.e., the BCI monitors the EEG in real-time and must discern between intentional control periods, and non-intentional, rest ones, interpreting the user’s intent only in the first case); (ii) calibration-free approach (“ready-to-use”, “Plug&Play”); (iii) subject-independence (general approach). The choice of the BCI operating paradigm fell on Steady State visual Evoked Potential (SSVEP). Two offline SSVEP classification algorithms were proposed and compared against reference literature, highlighting good performance, especially in terms of lower computational complexity. A method for improving classification accuracy was presented, suitable for use in online, self-paced scenarios (since it can be used to discriminate between intentional control periods and non-intentional ones). Results show a very good performance, in particular in terms of false positives immunity (0.26 min^-1), significantly improving over the state of the art. The whole BCI setup was tested both in lab condition, as well as in relatively harsher ones (in terms of environmental noise and non-idealities), such as in the context of the Handimatica 2014 exhibition. In both cases, a demonstrator allowing control of home appliances through BCI was developed

Tensor Regression

Regression analysis is a key area of interest in the field of data analysis and machine learning which is devoted to exploring the dependencies between variables, often using vectors. The emergence of high dimensional data in technologies such as neuroimaging, computer vision, climatology and social networks, has brought challenges to traditional data representation methods. Tensors, as high dimensional extensions of vectors, are considered as natural representations of high dimensional data. In this book, the authors provide a systematic study and analysis of tensor-based regression models and their applications in recent years. It groups and illustrates the existing tensor-based regression methods and covers the basics, core ideas, and theoretical characteristics of most tensor-based regression methods. In addition, readers can learn how to use existing tensor-based regression methods to solve specific regression tasks with multiway data, what datasets can be selected, and what software packages are available to start related work as soon as possible. Tensor Regression is the first thorough overview of the fundamentals, motivations, popular algorithms, strategies for efficient implementation, related applications, available datasets, and software resources for tensor-based regression analysis. It is essential reading for all students, researchers and practitioners of working on high dimensional data.Comment: 187 pages, 32 figures, 10 table

Statistical Analysis of EEG Phase Shift Events

This thesis develops statistical methods for the identification, and analysis of phase shift events, i.e. sudden changes in the timing relationship between coupled oscillators. Phase shifts events occur in many complex systems but here the primary interest is the analysis of electroencephalogram (EEG) recordings where they have been identified as markers of information transmission in the brain; as a secondary example we analyze systems of weakly coupled Rossler attractors. The main result, found in Chapter 2, is a novel method for estimating neural connectivity from EEG recordings based on spatio-temporal patterns of phase shift events. Phase shift events are modelled as a multivariate point process, and the ideas of Granger causality are used to motivate a directed measure of connectivity. The method is demonstrated on EEG recordings from 18 participants during three task conditions; resting, visual vigilance and auditory vigilance. Likelihood ratios are used to test the hypothesis of no Granger causal interaction between signals, and network patterns are analyzed using graph theory. In Chapter 3 the problem of phase shift identification is formulated as a change point in the instantaneous phase. Two estimators are considered, based on the cumulative summation and the instantaneous phase derivative. Block bootstrapping techniques are used to capture the dependency structure in the signals and determine critical values for shift identification. Estimators are evaluated both on their accuracy, and temporal resolution. Finally, detailed simulation studies are performed using realistic head models to investigate the effect of volume conduction (linear spread of electrical activity at the scalp) on phase shift analysis. Specifically, Chapter 4 investigates the effect of volume conduction on the analysis, in order to understand the limitations of the phase shift Granger causality method. Chapter 5 then investigates an approach for reducing the effect of volume conduction by using EEG source reconstruction techniques to estimate neural source activity and then identifying phase shifts with-in the brain directly from the reconstructed sources. The primary impact is the novel method for estimating neural connectivity. Each chapter investigates a different aspect of EEG phase analysis, and together they form a complete package for estimation and interpretation of neural connectivity. Two other areas of impact are in statistical change point analysis, and behavioural psychology

Machine Learning Methods with Noisy, Incomplete or Small Datasets

In many machine learning applications, available datasets are sometimes incomplete, noisy or affected by artifacts. In supervised scenarios, it could happen that label information has low quality, which might include unbalanced training sets, noisy labels and other problems. Moreover, in practice, it is very common that available data samples are not enough to derive useful supervised or unsupervised classifiers. All these issues are commonly referred to as the low-quality data problem. This book collects novel contributions on machine learning methods for low-quality datasets, to contribute to the dissemination of new ideas to solve this challenging problem, and to provide clear examples of application in real scenarios

Pattern Recognition

Pattern recognition is a very wide research field. It involves factors as diverse as sensors, feature extraction, pattern classification, decision fusion, applications and others. The signals processed are commonly one, two or three dimensional, the processing is done in real- time or takes hours and days, some systems look for one narrow object class, others search huge databases for entries with at least a small amount of similarity. No single person can claim expertise across the whole field, which develops rapidly, updates its paradigms and comprehends several philosophical approaches. This book reflects this diversity by presenting a selection of recent developments within the area of pattern recognition and related fields. It covers theoretical advances in classification and feature extraction as well as application-oriented works. Authors of these 25 works present and advocate recent achievements of their research related to the field of pattern recognition

Neuroinformatics in Functional Neuroimaging

This Ph.D. thesis proposes methods for information retrieval in functional neuroimaging through automatic computerized authority identification, and searching and cleaning in a neuroscience database. Authorities are found through cocitation analysis of the citation pattern among scientific articles. Based on data from a single scientific journal it is shown that multivariate analyses are able to determine group structure that is interpretable as particular “known ” subgroups in functional neuroimaging. Methods for text analysis are suggested that use a combination of content and links, in the form of the terms in scientific documents and scientific citations, respectively. These included context sensitive author ranking and automatic labeling of axes and groups in connection with multivariate analyses of link data. Talairach foci from the BrainMap ™ database are modeled with conditional probability density models useful for exploratory functional volumes modeling. A further application is shown with conditional outlier detection where abnormal entries in the BrainMap ™ database are spotted using kernel density modeling and the redundancy between anatomical labels and spatial Talairach coordinates. This represents a combination of simple term and spatial modeling. The specific outliers that were found in the BrainMap ™ database constituted among others: Entry errors, errors in the article and unusual terminology

Audio source separation for music in low-latency and high-latency scenarios

Aquesta tesi proposa mètodes per tractar les limitacions de les tècniques existents de separació de fonts musicals en condicions de baixa i alta latència. En primer lloc, ens centrem en els mètodes amb un baix cost computacional i baixa latència. Proposem l'ús de la regularització de Tikhonov com a mètode de descomposició de l'espectre en el context de baixa latència. El comparem amb les tècniques existents en tasques d'estimació i seguiment dels tons, que són passos crucials en molts mètodes de separació. A continuació utilitzem i avaluem el mètode de descomposició de l'espectre en tasques de separació de veu cantada, baix i percussió. En segon lloc, proposem diversos mètodes d'alta latència que milloren la separació de la veu cantada, gràcies al modelatge de components específics, com la respiració i les consonants. Finalment, explorem l'ús de correlacions temporals i anotacions manuals per millorar la separació dels instruments de percussió i dels senyals musicals polifònics complexes.Esta tesis propone métodos para tratar las limitaciones de las técnicas existentes de separación de fuentes musicales en condiciones de baja y alta latencia. En primer lugar, nos centramos en los métodos con un bajo coste computacional y baja latencia. Proponemos el uso de la regularización de Tikhonov como método de descomposición del espectro en el contexto de baja latencia. Lo comparamos con las técnicas existentes en tareas de estimación y seguimiento de los tonos, que son pasos cruciales en muchos métodos de separación. A continuación utilizamos y evaluamos el método de descomposición del espectro en tareas de separación de voz cantada, bajo y percusión. En segundo lugar, proponemos varios métodos de alta latencia que mejoran la separación de la voz cantada, gracias al modelado de componentes que a menudo no se toman en cuenta, como la respiración y las consonantes. Finalmente, exploramos el uso de correlaciones temporales y anotaciones manuales para mejorar la separación de los instrumentos de percusión y señales musicales polifónicas complejas.This thesis proposes specific methods to address the limitations of current music source separation methods in low-latency and high-latency scenarios. First, we focus on methods with low computational cost and low latency. We propose the use of Tikhonov regularization as a method for spectrum decomposition in the low-latency context. We compare it to existing techniques in pitch estimation and tracking tasks, crucial steps in many separation methods. We then use the proposed spectrum decomposition method in low-latency separation tasks targeting singing voice, bass and drums. Second, we propose several high-latency methods that improve the separation of singing voice by modeling components that are often not accounted for, such as breathiness and consonants. Finally, we explore using temporal correlations and human annotations to enhance the separation of drums and complex polyphonic music signals