2,605 research outputs found
A Hybrid Monte Carlo Ant Colony Optimization Approach for Protein Structure Prediction in the HP Model
The hydrophobic-polar (HP) model has been widely studied in the field of
protein structure prediction (PSP) both for theoretical purposes and as a
benchmark for new optimization strategies. In this work we introduce a new
heuristics based on Ant Colony Optimization (ACO) and Markov Chain Monte Carlo
(MCMC) that we called Hybrid Monte Carlo Ant Colony Optimization (HMCACO). We
describe this method and compare results obtained on well known HP instances in
the 3 dimensional cubic lattice to those obtained with standard ACO and
Simulated Annealing (SA). All methods were implemented using an unconstrained
neighborhood and a modified objective function to prevent the creation of
overlapping walks. Results show that our methods perform better than the other
heuristics in all benchmark instances.Comment: In Proceedings Wivace 2013, arXiv:1309.712
Cloud computing resource scheduling and a survey of its evolutionary approaches
A disruptive technology fundamentally transforming the way that computing services are delivered, cloud computing offers information and communication technology users a new dimension of convenience of resources, as services via the Internet. Because cloud provides a finite pool of virtualized on-demand resources, optimally scheduling them has become an essential and rewarding topic, where a trend of using Evolutionary Computation (EC) algorithms is emerging rapidly. Through analyzing the cloud computing architecture, this survey first presents taxonomy at two levels of scheduling cloud resources. It then paints a landscape of the scheduling problem and solutions. According to the taxonomy, a comprehensive survey of state-of-the-art approaches is presented systematically. Looking forward, challenges and potential future research directions are investigated and invited, including real-time scheduling, adaptive dynamic scheduling, large-scale scheduling, multiobjective scheduling, and distributed and parallel scheduling. At the dawn of Industry 4.0, cloud computing scheduling for cyber-physical integration with the presence of big data is also discussed. Research in this area is only in its infancy, but with the rapid fusion of information and data technology, more exciting and agenda-setting topics are likely to emerge on the horizon
An Improved Excitation Matching Method based on an Ant Colony Optimization for Suboptimal-Free Clustering in Sum-Difference Compromise Synthesis
Dealing with an excitation matching method, this paper presents a global optimization strategy for the optimal clustering in sum-difference compromise linear arrays. Starting from a combinatorial formulation of the problem at hand, the proposed technique is aimed at determining the sub-array configuration expressed as the optimal path inside a directed acyclic graph structure modelling the solution space. Towards this end, an ant colony metaheuristic is used to benefit of its hill-climbing properties in dealing with the non-convexity of the sub-arraying as well as in managing graph searches. A selected set of numerical experiments are reported to assess the efficiency and current limitations of the ant-based strategy also in comparison with previous local combinatorial search methods. (c) 2009 IEEE. Personal use of this material is permitted. Permission from IEEE must be obtained for all other users, including reprinting/ republishing this material for advertising or promotional purposes, creating new collective works for resale or redistribution to servers or lists, or reuse of any copyrighted components of this work in other works
Recommended from our members
Combinatorial optimization and metaheuristics
Today, combinatorial optimization is one of the youngest and most active areas of discrete mathematics. It is a branch of optimization in applied mathematics and computer science, related to operational research, algorithm theory and computational complexity theory. It sits at the intersection of several fields, including artificial intelligence, mathematics and software engineering. Its increasing interest arises for the fact that a large number of scientific and industrial problems can be formulated as abstract combinatorial optimization problems, through graphs and/or (integer) linear programs. Some of these problems have polynomial-time (“efficient”) algorithms, while most of them are NP-hard, i.e. it is not proved that they can be solved in polynomial-time. Mainly, it means that it is not possible to guarantee that an exact solution to the problem can be found and one has to settle for an approximate solution with known performance guarantees. Indeed, the goal of approximate methods is to find “quickly” (reasonable run-times), with “high” probability, provable “good” solutions (low error from the real optimal solution). In the last 20 years, a new kind of algorithm commonly called metaheuristics have emerged in this class, which basically try to combine heuristics in high level frameworks aimed at efficiently and effectively exploring the search space. This report briefly outlines the components, concepts, advantages and disadvantages of different metaheuristic approaches from a conceptual point of view, in order to analyze their similarities and differences. The two very significant forces of intensification and diversification, that mainly determine the behavior of a metaheuristic, will be pointed out. The report concludes by exploring the importance of hybridization and integration methods
On the role of metaheuristic optimization in bioinformatics
Metaheuristic algorithms are employed to solve complex and large-scale optimization problems in many different fields, from transportation and smart cities to finance. This paper discusses how metaheuristic algorithms are being applied to solve different optimization problems in the area of bioinformatics. While the text provides references to many optimization problems in the area, it focuses on those that have attracted more interest from the optimization community. Among the problems analyzed, the paper discusses in more detail the molecular docking problem, the protein structure prediction, phylogenetic inference, and different string problems. In addition, references to other relevant optimization problems are also given, including those related to medical imaging or gene selection for classification. From the previous analysis, the paper generates insights on research opportunities for the Operations Research and Computer Science communities in the field of bioinformatics
- …