Maximizing the Total Resolution of Graphs

A major factor affecting the readability of a graph drawing is its resolution. In the graph drawing literature, the resolution of a drawing is either measured based on the angles formed by consecutive edges incident to a common node (angular resolution) or by the angles formed at edge crossings (crossing resolution). In this paper, we evaluate both by introducing the notion of "total resolution", that is, the minimum of the angular and crossing resolution. To the best of our knowledge, this is the first time where the problem of maximizing the total resolution of a drawing is studied. The main contribution of the paper consists of drawings of asymptotically optimal total resolution for complete graphs (circular drawings) and for complete bipartite graphs (2-layered drawings). In addition, we present and experimentally evaluate a force-directed based algorithm that constructs drawings of large total resolution

Geometric Crossing-Minimization - A Scalable Randomized Approach

We consider the minimization of edge-crossings in geometric drawings of graphs G=(V, E), i.e., in drawings where each edge is depicted as a line segment. The respective decision problem is NP-hard [Daniel Bienstock, 1991]. Crossing-minimization, in general, is a popular theoretical research topic; see Vrt\u27o [Imrich Vrt\u27o, 2014]. In contrast to theory and the topological setting, the geometric setting did not receive a lot of attention in practice. Prior work [Marcel Radermacher et al., 2018] is limited to the crossing-minimization in geometric graphs with less than 200 edges. The described heuristics base on the primitive operation of moving a single vertex v to its crossing-minimal position, i.e., the position in R^2 that minimizes the number of crossings on edges incident to v. In this paper, we introduce a technique to speed-up the computation by a factor of 20. This is necessary but not sufficient to cope with graphs with a few thousand edges. In order to handle larger graphs, we drop the condition that each vertex v has to be moved to its crossing-minimal position and compute a position that is only optimal with respect to a small random subset of the edges. In our theoretical contribution, we consider drawings that contain for each edge uv in E and each position p in R^2 for v o(|E|) crossings. In this case, we prove that with a random subset of the edges of size Theta(k log k) the co-crossing number of a degree-k vertex v, i.e., the number of edge pairs uv in E, e in E that do not cross, can be approximated by an arbitrary but fixed factor delta with high probability. In our experimental evaluation, we show that the randomized approach reduces the number of crossings in graphs with up to 13 000 edges considerably. The evaluation suggests that depending on the degree-distribution different strategies result in the fewest number of crossings

Graph Drawing via Gradient Descent, (GD)2(GD)^2

Readability criteria, such as distance or neighborhood preservation, are often used to optimize node-link representations of graphs to enable the comprehension of the underlying data. With few exceptions, graph drawing algorithms typically optimize one such criterion, usually at the expense of others. We propose a layout approach, Graph Drawing via Gradient Descent, $(GD)^2$, that can handle multiple readability criteria. $(GD)^2$ can optimize any criterion that can be described by a smooth function. If the criterion cannot be captured by a smooth function, a non-smooth function for the criterion is combined with another smooth function, or auto-differentiation tools are used for the optimization. Our approach is flexible and can be used to optimize several criteria that have already been considered earlier (e.g., obtaining ideal edge lengths, stress, neighborhood preservation) as well as other criteria which have not yet been explicitly optimized in such fashion (e.g., vertex resolution, angular resolution, aspect ratio). We provide quantitative and qualitative evidence of the effectiveness of $(GD)^2$ with experimental data and a functional prototype: \url{http://hdc.cs.arizona.edu/~mwli/graph-drawing/}.Comment: Appears in the Proceedings of the 28th International Symposium on Graph Drawing and Network Visualization (GD 2020

GiViP: A Visual Profiler for Distributed Graph Processing Systems

Analyzing large-scale graphs provides valuable insights in different application scenarios. While many graph processing systems working on top of distributed infrastructures have been proposed to deal with big graphs, the tasks of profiling and debugging their massive computations remain time consuming and error-prone. This paper presents GiViP, a visual profiler for distributed graph processing systems based on a Pregel-like computation model. GiViP captures the huge amount of messages exchanged throughout a computation and provides an interactive user interface for the visual analysis of the collected data. We show how to take advantage of GiViP to detect anomalies related to the computation and to the infrastructure, such as slow computing units and anomalous message patterns.Comment: Appears in the Proceedings of the 25th International Symposium on Graph Drawing and Network Visualization (GD 2017

Data Mining Using the Crossing Minimization Paradigm

Our ability and capacity to generate, record and store multi-dimensional, apparently unstructured data is increasing rapidly, while the cost of data storage is going down. The data recorded is not perfect, as noise gets introduced in it from different sources. Some of the basic forms of noise are incorrect recording of values and missing values. The formal study of discovering useful hidden information in the data is called Data Mining. Because of the size, and complexity of the problem, practical data mining problems are best attempted using automatic means. Data Mining can be categorized into two types i.e. supervised learning or classification and unsupervised learning or clustering. Clustering only the records in a database (or data matrix) gives a global view of the data and is called one-way clustering. For a detailed analysis or a local view, biclustering or co-clustering or two-way clustering is required involving the simultaneous clustering of the records and the attributes. In this dissertation, a novel fast and white noise tolerant data mining solution is proposed based on the Crossing Minimization (CM) paradigm; the solution works for one-way as well as two-way clustering for discovering overlapping biclusters. For decades the CM paradigm has traditionally been used for graph drawing and VLSI (Very Large Scale Integration) circuit design for reducing wire length and congestion. The utility of the proposed technique is demonstrated by comparing it with other biclustering techniques using simulated noisy, as well as real data from Agriculture, Biology and other domains. Two other interesting and hard problems also addressed in this dissertation are (i) the Minimum Attribute Subset Selection (MASS) problem and (ii) Bandwidth Minimization (BWM) problem of sparse matrices. The proposed CM technique is demonstrated to provide very convincing results while attempting to solve the said problems using real public domain data. Pakistan is the fourth largest supplier of cotton in the world. An apparent anomaly has been observed during 1989-97 between cotton yield and pesticide consumption in Pakistan showing unexpected periods of negative correlation. By applying the indigenous CM technique for one-way clustering to real Agro-Met data (2001-2002), a possible explanation of the anomaly has been presented in this thesis