Unification in the Description Logic EL w.r.t. Cycle-Restricted TBoxes

Unification in Description Logics (DLs) has been proposed as an inference service that can, for example, be used to detect redundancies in ontologies. The inexpressive Description Logic EL is of particular interest in this context since, on the one hand, several large biomedical ontologies are defined using EL. On the other hand, unification in EL has recently been shown to be NP-complete, and thus of significantly lower complexity than unification in other DLs of similarly restricted expressive power. However, the unification algorithms for EL developed so far cannot deal with general concept inclusion axioms (GCIs). This paper makes a considerable step towards addressing this problem, but the GCIs our new unification algorithm can deal with still need to satisfy a certain cycle restriction

Hybrid Unification in the Description Logic EL

Unification in Description Logics (DLs) has been proposed as an inference service that can, for example, be used to detect redundancies in ontologies. For the DL EL, which is used to define several large biomedical ontologies, unification is NP-complete. However, the unification algorithms for EL developed until recently could not deal with ontologies containing general concept inclusions (GCIs). In a series of recent papers we have made some progress towards addressing this problem, but the ontologies the developed unification algorithms can deal with need to satisfy a certain cycle restriction. In the present paper, we follow a different approach. Instead of restricting the input ontologies, we generalize the notion of unifiers to so-called hybrid unifiers. Whereas classical unifiers can be viewed as acyclic TBoxes, hybrid unifiers are cyclic TBoxes, which are interpreted together with the ontology of the input using a hybrid semantics that combines fixpoint and descriptive semantics. We show that hybrid unification in EL is NP-complete and introduce a goal-oriented algorithm for computing hybrid unifiers

A Goal-Oriented Algorithm for Unification in ELHR+ w.r.t. Cycle-Restricted Ontologies

Unification in Description Logics (DLs) has been proposed as an inference service that can, for example, be used to detect redundancies in ontologies. For the DL EL, which is used to define several large biomedical ontologies, unification is NP-complete. A goal-oriented NP unification algorithm for EL that uses nondeterministic rules to transform a given unification problem into solved form has recently been presented. In this report, we extend this goal-oriented algorithm in two directions: on the one hand, we add general concept inclusion axioms (GCIs), and on the other hand, we add role hierarchies (H) and transitive roles (R+). For the algorithm to be complete, however, the ontology consisting of the GCIs and role axioms needs to satisfy a certain cycle restriction

Matching with respect to general concept inclusions in the Description Logic EL

Matching concept descriptions against concept patterns was introduced as a new inference task in Description Logics (DLs) almost 20 years ago, motivated by applications in the Classic system. For the DL EL, it was shown in 2000 that the matching problem is NP-complete. It then took almost 10 years before this NP-completeness result could be extended from matching to unification in EL. The next big challenge was then to further extend these results from matching and unification without a TBox to matching and unification w.r.t. a general TBox, i.e., a finite set of general concept inclusions. For unification, we could show some partial results for general TBoxes that satisfy a certain restriction on cyclic dependencies between concepts, but the general case is still open. For matching, we solve the general case in this paper: we show that matching in EL w.r.t. general TBoxes is NP-complete by introducing a goal-oriented matching algorithm that uses non-deterministic rules to transform a given matching problem into a solved form by a polynomial number of rule applications. We also investigate some tractable variants of the matching problem

SAT Encoding of Unification in ELHR+ w.r.t. Cycle-Restricted Ontologies

Unification in Description Logics has been proposed as an inference service that can, for example, be used to detect redundancies in ontologies. For the Description Logic EL, which is used to define several large biomedical ontologies, unification is NP-complete. An NP unification algorithm for EL based on a translation into propositional satisfiability (SAT) has recently been presented. In this report, we extend this SAT encoding in two directions: on the one hand, we add general concept inclusion axioms, and on the other hand, we add role hierarchies (H) and transitive roles (R+). For the translation to be complete, however, the ontology needs to satisfy a certain cycle restriction. The SAT translation depends on a new rewriting-based characterization of subsumption w.r.t. ELHR+-ontologies

Dismatching and Local Disunification in EL

Unification in Description Logics has been introduced as a means to detect redundancies in ontologies. We try to extend the known decidability results for unification in the Description Logic EL to disunification since negative constraints on unifiers can be used to avoid unwanted unifiers. While decidability of the solvability of general EL-disunification problems remains an open problem, we obtain NP-completeness results for two interesting special cases: dismatching problems, where one side of each negative constraint must be ground, and local solvability of disunification problems, where we restrict the attention to solutions that are built from so-called atoms occurring in the input problem. More precisely, we first show that dismatching can be reduced to local disunification, and then provide two complementary NP-algorithms for finding local solutions of (general) disunification problems

Optimal Fixed-Premise Repairs of EL TBoxes: Extended Version

Reasoners can be used to derive implicit consequences from an ontology. Sometimes unwanted consequences are revealed, indicating errors or privacy-sensitive information, and the ontology needs to be appropriately repaired. The classical approach is to remove just enough axioms such that the unwanted consequences vanish. However, this is often too rough since mere axiom deletion also erases many other consequences that might actually be desired. The goal should not be to remove a minimal number of axioms but to modify the ontology such that only a minimal number of consequences is removed, including the unwanted ones. Specifically, a repair should rather be logically entailed by the input ontology, instead of being a subset. To this end, we introduce a framework for computing fixed-premise repairs of $\mathcal{EL}$ TBoxes. In the first variant the conclusions must be generalizations of those in the input TBox, while in the second variant no such restriction is imposed. In both variants, every repair is entailed by an optimal one and, up to equivalence, the set of all optimal repairs can be computed in exponential time. A prototypical implementation is provided. In addition, we show new complexity results regarding gentle repairs.This is an extended version of an article accepted at the 45th German Conference on Artificial Intelligence (KI 2022)

Most specific consequences in the description logic EL

The notion of a most specific consequence with respect to some terminological box is introduced, conditions for its existence in the description logic EL and its variants are provided, and means for its computation are developed. Algebraic properties of most specific consequences are explored. Furthermore, several applications that make use of this new notion are proposed and, in particular, it is shown how given terminological knowledge can be incorporated in existing approaches for the axiomatization of observations. For instance, a procedure for an incremental learning of concept inclusions from sequences of interpretations is developed

Constructing and Extending Description Logic Ontologies using Methods of Formal Concept Analysis

Description Logic (abbrv. DL) belongs to the field of knowledge representation and reasoning. DL researchers have developed a large family of logic-based languages, so-called description logics (abbrv. DLs). These logics allow their users to explicitly represent knowledge as ontologies, which are finite sets of (human- and machine-readable) axioms, and provide them with automated inference services to derive implicit knowledge. The landscape of decidability and computational complexity of common reasoning tasks for various description logics has been explored in large parts: there is always a trade-off between expressibility and reasoning costs. It is therefore not surprising that DLs are nowadays applied in a large variety of domains: agriculture, astronomy, biology, defense, education, energy management, geography, geoscience, medicine, oceanography, and oil and gas. Furthermore, the most notable success of DLs is that these constitute the logical underpinning of the Web Ontology Language (abbrv. OWL) in the Semantic Web. Formal Concept Analysis (abbrv. FCA) is a subfield of lattice theory that allows to analyze data-sets that can be represented as formal contexts. Put simply, such a formal context binds a set of objects to a set of attributes by specifying which objects have which attributes. There are two major techniques that can be applied in various ways for purposes of conceptual clustering, data mining, machine learning, knowledge management, knowledge visualization, etc. On the one hand, it is possible to describe the hierarchical structure of such a data-set in form of a formal concept lattice. On the other hand, the theory of implications (dependencies between attributes) valid in a given formal context can be axiomatized in a sound and complete manner by the so-called canonical base, which furthermore contains a minimal number of implications w.r.t. the properties of soundness and completeness. In spite of the different notions used in FCA and in DLs, there has been a very fruitful interaction between these two research areas. My thesis continues this line of research and, more specifically, I will describe how methods from FCA can be used to support the automatic construction and extension of DL ontologies from data

Dismatching and Local Disunification in EL

Unification in Description Logics has been introduced as a means to detect redundancies in ontologies. We try to extend the known decidability results for unification in the Description Logic EL to disunification since negative constraints on unifiers can be used to avoid unwanted unifiers. While decidability of the solvability of general EL-disunification problems remains an open problem, we obtain NP-completeness results for two interesting special cases: dismatching problems, where one side of each negative constraint must be ground, and local solvability of disunification problems, where we restrict the attention to solutions that are built from so-called atoms occurring in the input problem. More precisely, we first show that dismatching can be reduced to local disunification, and then provide two complementary NP-algorithms for finding local solutions of (general) disunification problems