Representation and Inference for Open-Domain Question Answering: Strength and Limits of two Italian Semantic Lexicons

La ricerca descritta nella tesi è stata dedicata alla costruzione di un prototipo di sistema di Question Answering per la lingua italiana. Il prototipo è stato utilizzato come ambiente di valutazione dell’utilità dell’informazione codificata in due lessici semantici computazionali, ItalWordNet e SIMPLE-CLIPS. Il fine è quello di metter in evidenza ipunti di forza e ilimiti della rappresentazione dell’informazione proposta dai due lessici

Semi-automated Ontology Generation for Biocuration and Semantic Search

Background: In the life sciences, the amount of literature and experimental data grows at a tremendous rate. In order to effectively access and integrate these data, biomedical ontologies – controlled, hierarchical vocabularies – are being developed. Creating and maintaining such ontologies is a difficult, labour-intensive, manual process. Many computational methods which can support ontology construction have been proposed in the past. However, good, validated systems are largely missing. Motivation: The biocuration community plays a central role in the development of ontologies. Any method that can support their efforts has the potential to have a huge impact in the life sciences. Recently, a number of semantic search engines were created that make use of biomedical ontologies for document retrieval. To transfer the technology to other knowledge domains, suitable ontologies need to be created. One area where ontologies may prove particularly useful is the search for alternative methods to animal testing, an area where comprehensive search is of special interest to determine the availability or unavailability of alternative methods. Results: The Dresden Ontology Generator for Directed Acyclic Graphs (DOG4DAG) developed in this thesis is a system which supports the creation and extension of ontologies by semi-automatically generating terms, definitions, and parent-child relations from text in PubMed, the web, and PDF repositories. The system is seamlessly integrated into OBO-Edit and Protégé, two widely used ontology editors in the life sciences. DOG4DAG generates terms by identifying statistically significant noun-phrases in text. For definitions and parent-child relations it employs pattern-based web searches. Each generation step has been systematically evaluated using manually validated benchmarks. The term generation leads to high quality terms also found in manually created ontologies. Definitions can be retrieved for up to 78% of terms, child ancestor relations for up to 54%. No other validated system exists that achieves comparable results. To improve the search for information on alternative methods to animal testing an ontology has been developed that contains 17,151 terms of which 10% were newly created and 90% were re-used from existing resources. This ontology is the core of Go3R, the first semantic search engine in this field. When a user performs a search query with Go3R, the search engine expands this request using the structure and terminology of the ontology. The machine classification employed in Go3R is capable of distinguishing documents related to alternative methods from those which are not with an F-measure of 90% on a manual benchmark. Approximately 200,000 of the 19 million documents listed in PubMed were identified as relevant, either because a specific term was contained or due to the automatic classification. The Go3R search engine is available on-line under www.Go3R.org

Retrieving questions and answers in community-based question answering services

Ph.DDOCTOR OF PHILOSOPH

Semi-automated Ontology Generation for Biocuration and Semantic Search

Background: In the life sciences, the amount of literature and experimental data grows at a tremendous rate. In order to effectively access and integrate these data, biomedical ontologies – controlled, hierarchical vocabularies – are being developed. Creating and maintaining such ontologies is a difficult, labour-intensive, manual process. Many computational methods which can support ontology construction have been proposed in the past. However, good, validated systems are largely missing. Motivation: The biocuration community plays a central role in the development of ontologies. Any method that can support their efforts has the potential to have a huge impact in the life sciences. Recently, a number of semantic search engines were created that make use of biomedical ontologies for document retrieval. To transfer the technology to other knowledge domains, suitable ontologies need to be created. One area where ontologies may prove particularly useful is the search for alternative methods to animal testing, an area where comprehensive search is of special interest to determine the availability or unavailability of alternative methods. Results: The Dresden Ontology Generator for Directed Acyclic Graphs (DOG4DAG) developed in this thesis is a system which supports the creation and extension of ontologies by semi-automatically generating terms, definitions, and parent-child relations from text in PubMed, the web, and PDF repositories. The system is seamlessly integrated into OBO-Edit and Protégé, two widely used ontology editors in the life sciences. DOG4DAG generates terms by identifying statistically significant noun-phrases in text. For definitions and parent-child relations it employs pattern-based web searches. Each generation step has been systematically evaluated using manually validated benchmarks. The term generation leads to high quality terms also found in manually created ontologies. Definitions can be retrieved for up to 78% of terms, child ancestor relations for up to 54%. No other validated system exists that achieves comparable results. To improve the search for information on alternative methods to animal testing an ontology has been developed that contains 17,151 terms of which 10% were newly created and 90% were re-used from existing resources. This ontology is the core of Go3R, the first semantic search engine in this field. When a user performs a search query with Go3R, the search engine expands this request using the structure and terminology of the ontology. The machine classification employed in Go3R is capable of distinguishing documents related to alternative methods from those which are not with an F-measure of 90% on a manual benchmark. Approximately 200,000 of the 19 million documents listed in PubMed were identified as relevant, either because a specific term was contained or due to the automatic classification. The Go3R search engine is available on-line under www.Go3R.org

Knowledge-based and data-driven approaches for geographical information access

Geographical Information Access (GeoIA) can be defined as a way of retrieving information from textual collections that includes the automatic analysis and interpretation of the geographical constraints and terms present in queries and documents. This PhD thesis presents, describes and evaluates several heterogeneous approaches for the following three GeoIA tasks: Geographical Information Retrieval (GIR), Geographical Question Answering (GeoQA), and Textual Georeferencing (TG). The GIR task deals with user queries that search over documents (e.g. ¿vineyards in California?) and the GeoQA task treats questions that retrieve answers (e.g. ¿What is the capital of France?). On the other hand, TG is the task of associate one or more georeferences (such as polygons or coordinates in a geodetic reference system) to electronic documents. Current state-of-the-art AI algorithms are not yet fully understanding the semantic meaning and the geographical constraints and terms present in queries and document collections. This thesis attempts to improve the effectiveness results of GeoIA tasks by: 1) improving the detection, understanding, and use of a part of the geographical and the thematic content of queries and documents with Toponym Recognition, Toponym Disambiguation and Natural Language Processing (NLP) techniques, and 2) combining Geographical Knowledge-Based Heuristics based on common sense with Data-Driven IR algorithms. The main contributions of this thesis to the state-of-the-art of GeoIA tasks are: 1) The presentation of 10 novel approaches for GeoIA tasks: 3 approaches for GIR, 3 for GeoQA, and 4 for Textual Georeferencing (TG). 2) The evaluation of these novel approaches in these contexts: within official evaluation benchmarks, after evaluation benchmarks with the test collections, and with other specific datasets. Most of these algorithms have been evaluated in international evaluations and some of them achieved top-ranked state-of-the-art results, including top-performing results in GIR (GeoCLEF 2007) and TG (MediaEval 2014) benchmarks. 3) The experiments reported in this PhD thesis show that the approaches can combine effectively Geographical Knowledge and NLP with Data-Driven techniques to improve the efectiveness measures of the three Geographical Information Access tasks investigated. 4) TALPGeoIR: a novel GIR approach that combines Geographical Knowledge ReRanking (GeoKR), NLP and Relevance Feedback (RF) that achieved state-of-the-art results in official GeoCLEF benchmarks (Ferrés and Rodríguez, 2008; Mandl et al., 2008) and posterior experiments (Ferrés and Rodríguez, 2015a). This approach has been evaluated with the full GeoCLEF corpus (100 topics) and showed that GeoKR, NLP, and RF techniques evaluated separately or in combination improve the results in MAP and R-Precision effectiveness measures of the state-of-the-art IR algorithms TF-IDF, BM25 and InL2 and show statistical significance in most of the experiments. 5) GeoTALP-QA: a scope-based GeoQA approach for Spanish and English and its evaluation with a set of questions of the Spanish geography (Ferrés and Rodríguez, 2006). 6) Four state-of-the-art Textual Georeferencing approaches for informal and formal documents that achieved state-of-the-art results in evaluation benchmarks (Ferrés and Rodríguez, 2014) and posterior experiments (Ferrés and Rodríguez, 2011; Ferrés and Rodríguez, 2015b).L'Accés a la Informació Geogràfica (GeoAI) pot ser definit com una forma de recuperar informació de col·lecions textuals que inclou l'anàlisi automàtic i la interpretació dels termes i restriccions geogràfiques que apareixen en consultes i documents. Aquesta tesi doctoral presenta, descriu i avalua varies aproximacions heterogènies a les seguents tasques de GeoAI: Recuperació de la Informació Geogràfica (RIG), Cerca de la Resposta Geogràfica (GeoCR), i Georeferenciament Textual (GT). La tasca de RIG tracta amb consultes d'usuari que cerquen documents (e.g. ¿vinyes a California?) i la tasca GeoCR tracta de recuperar respostes concretes a preguntes (e.g. ¿Quina és la capital de França?). D'altra banda, GT es la tasca de relacionar una o més referències geogràfiques (com polígons o coordenades en un sistema de referència geodètic) a documents electrònics. Els algoritmes de l'estat de l'art actual en Intel·ligència Artificial encara no comprenen completament el significat semàntic i els termes i les restriccions geogràfiques presents en consultes i col·leccions de documents. Aquesta tesi intenta millorar els resultats en efectivitat de les tasques de GeoAI de la seguent manera: 1) millorant la detecció, comprensió, i la utilització d'una part del contingut geogràfic i temàtic de les consultes i documents amb tècniques de reconeixement de topònims, desambiguació de topònims, i Processament del Llenguatge Natural (PLN), i 2) combinant heurístics basats en Coneixement Geogràfic i en el sentit comú humà amb algoritmes de Recuperació de la Informació basats en dades. Les principals contribucions d'aquesta tesi a l'estat de l'art de les tasques de GeoAI són: 1) La presentació de 10 noves aproximacions a les tasques de GeoAI: 3 aproximacions per RIG, 3 per GeoCR, i 4 per Georeferenciament Textual (GT). 2) L'avaluació d'aquestes noves aproximacions en aquests contexts: en el marc d'avaluacions comparatives internacionals, posteriorment a avaluacions comparatives internacionals amb les col·lections de test, i amb altres conjunts de dades específics. La majoria d'aquests algoritmes han estat avaluats en avaluacions comparatives internacionals i alguns d'ells aconseguiren alguns dels millors resultats en l'estat de l'art, com per exemple els resultats en comparatives de RIG (GeoCLEF 2007) i GT (MediaEval 2014). 3) Els experiments descrits en aquesta tesi mostren que les aproximacions poden combinar coneixement geogràfic i PLN amb tècniques basades en dades per millorar les mesures d'efectivitat en les tres tasques de l'Accés a la Informació Geogràfica investigades. 4) TALPGeoIR: una nova aproximació a la RIG que combina Re-Ranking amb Coneixement Geogràfic (GeoKR), PLN i Retroalimentació de Rellevancia (RR) que aconseguí resultats en l'estat de l'art en comparatives oficials GeoCLEF (Ferrés and Rodríguez, 2008; Mandl et al., 2008) i en experiments posteriors (Ferrés and Rodríguez, 2015a). Aquesta aproximació ha estat avaluada amb el conjunt complert del corpus GeoCLEF (100 topics) i ha mostrat que les tècniques GeoKR, PLN i RR avaluades separadament o en combinació milloren els resultats en les mesures efectivitat MAP i R-Precision dels algoritmes de l'estat de l'art en Recuperació de la Infomació TF-IDF, BM25 i InL2 i a més mostren significació estadística en la majoria dels experiments. 5) GeoTALP-QA: una aproximació basada en l'àmbit geogràfic per espanyol i anglès i la seva avaluació amb un conjunt de preguntes de la geografía espanyola (Ferrés and Rodríguez, 2006). 6) Quatre aproximacions per al georeferenciament de documents formals i informals que obtingueren resultats en l'estat de l'art en avaluacions comparatives (Ferrés and Rodríguez, 2014) i en experiments posteriors (Ferrés and Rodríguez, 2011; Ferrés and Rodríguez, 2015b)

Knowledge-based and data-driven approaches for geographical information access

Geographical Information Access (GeoIA) can be defined as a way of retrieving information from textual collections that includes the automatic analysis and interpretation of the geographical constraints and terms present in queries and documents. This PhD thesis presents, describes and evaluates several heterogeneous approaches for the following three GeoIA tasks: Geographical Information Retrieval (GIR), Geographical Question Answering (GeoQA), and Textual Georeferencing (TG). The GIR task deals with user queries that search over documents (e.g. ¿vineyards in California?) and the GeoQA task treats questions that retrieve answers (e.g. ¿What is the capital of France?). On the other hand, TG is the task of associate one or more georeferences (such as polygons or coordinates in a geodetic reference system) to electronic documents. Current state-of-the-art AI algorithms are not yet fully understanding the semantic meaning and the geographical constraints and terms present in queries and document collections. This thesis attempts to improve the effectiveness results of GeoIA tasks by: 1) improving the detection, understanding, and use of a part of the geographical and the thematic content of queries and documents with Toponym Recognition, Toponym Disambiguation and Natural Language Processing (NLP) techniques, and 2) combining Geographical Knowledge-Based Heuristics based on common sense with Data-Driven IR algorithms. The main contributions of this thesis to the state-of-the-art of GeoIA tasks are: 1) The presentation of 10 novel approaches for GeoIA tasks: 3 approaches for GIR, 3 for GeoQA, and 4 for Textual Georeferencing (TG). 2) The evaluation of these novel approaches in these contexts: within official evaluation benchmarks, after evaluation benchmarks with the test collections, and with other specific datasets. Most of these algorithms have been evaluated in international evaluations and some of them achieved top-ranked state-of-the-art results, including top-performing results in GIR (GeoCLEF 2007) and TG (MediaEval 2014) benchmarks. 3) The experiments reported in this PhD thesis show that the approaches can combine effectively Geographical Knowledge and NLP with Data-Driven techniques to improve the efectiveness measures of the three Geographical Information Access tasks investigated. 4) TALPGeoIR: a novel GIR approach that combines Geographical Knowledge ReRanking (GeoKR), NLP and Relevance Feedback (RF) that achieved state-of-the-art results in official GeoCLEF benchmarks (Ferrés and Rodríguez, 2008; Mandl et al., 2008) and posterior experiments (Ferrés and Rodríguez, 2015a). This approach has been evaluated with the full GeoCLEF corpus (100 topics) and showed that GeoKR, NLP, and RF techniques evaluated separately or in combination improve the results in MAP and R-Precision effectiveness measures of the state-of-the-art IR algorithms TF-IDF, BM25 and InL2 and show statistical significance in most of the experiments. 5) GeoTALP-QA: a scope-based GeoQA approach for Spanish and English and its evaluation with a set of questions of the Spanish geography (Ferrés and Rodríguez, 2006). 6) Four state-of-the-art Textual Georeferencing approaches for informal and formal documents that achieved state-of-the-art results in evaluation benchmarks (Ferrés and Rodríguez, 2014) and posterior experiments (Ferrés and Rodríguez, 2011; Ferrés and Rodríguez, 2015b).L'Accés a la Informació Geogràfica (GeoAI) pot ser definit com una forma de recuperar informació de col·lecions textuals que inclou l'anàlisi automàtic i la interpretació dels termes i restriccions geogràfiques que apareixen en consultes i documents. Aquesta tesi doctoral presenta, descriu i avalua varies aproximacions heterogènies a les seguents tasques de GeoAI: Recuperació de la Informació Geogràfica (RIG), Cerca de la Resposta Geogràfica (GeoCR), i Georeferenciament Textual (GT). La tasca de RIG tracta amb consultes d'usuari que cerquen documents (e.g. ¿vinyes a California?) i la tasca GeoCR tracta de recuperar respostes concretes a preguntes (e.g. ¿Quina és la capital de França?). D'altra banda, GT es la tasca de relacionar una o més referències geogràfiques (com polígons o coordenades en un sistema de referència geodètic) a documents electrònics. Els algoritmes de l'estat de l'art actual en Intel·ligència Artificial encara no comprenen completament el significat semàntic i els termes i les restriccions geogràfiques presents en consultes i col·leccions de documents. Aquesta tesi intenta millorar els resultats en efectivitat de les tasques de GeoAI de la seguent manera: 1) millorant la detecció, comprensió, i la utilització d'una part del contingut geogràfic i temàtic de les consultes i documents amb tècniques de reconeixement de topònims, desambiguació de topònims, i Processament del Llenguatge Natural (PLN), i 2) combinant heurístics basats en Coneixement Geogràfic i en el sentit comú humà amb algoritmes de Recuperació de la Informació basats en dades. Les principals contribucions d'aquesta tesi a l'estat de l'art de les tasques de GeoAI són: 1) La presentació de 10 noves aproximacions a les tasques de GeoAI: 3 aproximacions per RIG, 3 per GeoCR, i 4 per Georeferenciament Textual (GT). 2) L'avaluació d'aquestes noves aproximacions en aquests contexts: en el marc d'avaluacions comparatives internacionals, posteriorment a avaluacions comparatives internacionals amb les col·lections de test, i amb altres conjunts de dades específics. La majoria d'aquests algoritmes han estat avaluats en avaluacions comparatives internacionals i alguns d'ells aconseguiren alguns dels millors resultats en l'estat de l'art, com per exemple els resultats en comparatives de RIG (GeoCLEF 2007) i GT (MediaEval 2014). 3) Els experiments descrits en aquesta tesi mostren que les aproximacions poden combinar coneixement geogràfic i PLN amb tècniques basades en dades per millorar les mesures d'efectivitat en les tres tasques de l'Accés a la Informació Geogràfica investigades. 4) TALPGeoIR: una nova aproximació a la RIG que combina Re-Ranking amb Coneixement Geogràfic (GeoKR), PLN i Retroalimentació de Rellevancia (RR) que aconseguí resultats en l'estat de l'art en comparatives oficials GeoCLEF (Ferrés and Rodríguez, 2008; Mandl et al., 2008) i en experiments posteriors (Ferrés and Rodríguez, 2015a). Aquesta aproximació ha estat avaluada amb el conjunt complert del corpus GeoCLEF (100 topics) i ha mostrat que les tècniques GeoKR, PLN i RR avaluades separadament o en combinació milloren els resultats en les mesures efectivitat MAP i R-Precision dels algoritmes de l'estat de l'art en Recuperació de la Infomació TF-IDF, BM25 i InL2 i a més mostren significació estadística en la majoria dels experiments. 5) GeoTALP-QA: una aproximació basada en l'àmbit geogràfic per espanyol i anglès i la seva avaluació amb un conjunt de preguntes de la geografía espanyola (Ferrés and Rodríguez, 2006). 6) Quatre aproximacions per al georeferenciament de documents formals i informals que obtingueren resultats en l'estat de l'art en avaluacions comparatives (Ferrés and Rodríguez, 2014) i en experiments posteriors (Ferrés and Rodríguez, 2011; Ferrés and Rodríguez, 2015b).Postprint (published version

Designing Service-Oriented Chatbot Systems Using a Construction Grammar-Driven Natural Language Generation System

Service oriented chatbot systems are used to inform users in a conversational manner about a particular service or product on a website. Our research shows that current systems are time consuming to build and not very accurate or satisfying to users. We find that natural language understanding and natural language generation methods are central to creating an e�fficient and useful system. In this thesis we investigate current and past methods in this research area and place particular emphasis on Construction Grammar and its computational implementation. Our research shows that users have strong emotive reactions to how these systems behave, so we also investigate the human computer interaction component. We present three systems (KIA, John and KIA2), and carry out extensive user tests on all of them, as well as comparative tests. KIA is built using existing methods, John is built with the user in mind and KIA2 is built using the construction grammar method. We found that the construction grammar approach performs well in service oriented chatbots systems, and that users preferred it over other systems