A Framework for Datatype Transformation

We study one dimension in program evolution, namely the evolution of the datatype declarations in a program. To this end, a suite of basic transformation operators is designed. We cover structure-preserving refactorings, but also structure-extending and -reducing adaptations. Both the object programs that are subject to datatype transformations, and the meta programs that encode datatype transformations are functional programs.Comment: Minor revision; now accepted at LDTA 200

Information Integration - the process of integration, evolution and versioning

At present, many information sources are available wherever you are. Most of the time, the information needed is spread across several of those information sources. Gathering this information is a tedious and time consuming job. Automating this process would assist the user in its task. Integration of the information sources provides a global information source with all information needed present. All of these information sources also change over time. With each change of the information source, the schema of this source can be changed as well. The data contained in the information source, however, cannot be changed every time, due to the huge amount of data that would have to be converted in order to conform to the most recent schema.\ud In this report we describe the current methods to information integration, evolution and versioning. We distinguish between integration of schemas and integration of the actual data. We also show some key issues when integrating XML data sources

UML to XML-Schema Transformation: a Case Study in Managing Alternative Model Transformations in MDA

In a Model Driven Architecture (MDA) software development process, models are\ud repeatedly transformed to other models in order to finally achieve a set of models with enough details to implement a system. Generally, there are multiple ways to transform one model into another model. Alternative target models differ in their quality properties and the selection of a particular model is determined on the basis of specific requirements. Software engineers must be able to identify, compare and select the appropriate transformations within the given set of requirements. The current transformation languages used for describing and executing model transformations only provide means to specify the transformations but do not help to identify and select from the alternative transformations. In this paper we propose a process and a set of techniques for constructing a transformation space for a given transformation problem. The process uses a source model, its meta-model and the meta-model of the target as input and generates a transformation space. Every element in that space represents a transformation that produces a result that is an instance of the target meta-model. The requirements that must be fulfilled by the result are captured and represented in a quality model. We explain our approach using an illustrative example for transforming a platform independent model expressed in UML into platform specific models that represent XML schemas. A particular quality model of extensibility is presented in the paper

Automated syntactic mediation for Web service integration

As the Web Services and Grid community adopt Semantic Web technology, we observe a shift towards higher-level workflow composition and service discovery practices. While this provides excellent functionality to non-expert users, more sophisticated middleware is required to hide the details of service invocation and service integration. An investigation of a common Bioinformatics use case reveals that the execution of high-level workflow designs requires additional processing to harmonise syntactically incompatible service interfaces. In this paper, we present an architecture to support the automatic reconciliation of data formats in such Web Service worklflows. The mediation of data is driven by ontologies that encapsulate the information contained in heterogeneous data structures supplying a common, conceptual data representation. Data conversion is carried out by a Configurable Mediator component, consuming mappings between \xml schemas and \owl ontologies. We describe our system and give examples of our mapping language against the background of a Bioinformatics use case

Data access and integration in the ISPIDER proteomics grid

Grid computing has great potential for supporting the integration of complex, fast changing biological data repositories to enable distributed data analysis. One scenario where Grid computing has such potential is provided by proteomics resources which are rapidly being developed with the emergence of affordable, reliable methods to study the proteome. The protein identifications arising from these methods derive from multiple repositories which need to be integrated to enable uniform access to them. A number of technologies exist which enable these resources to be accessed in a Grid environment, but the independent development of these resources means that significant data integration challenges, such as heterogeneity and schema evolution, have to be met. This paper presents an architecture which supports the combined use of Grid data access (OGSA-DAI), Grid distributed querying (OGSA-DQP) and data integration (AutoMed) software tools to support distributed data analysis. We discuss the application of this architecture for the integration of several autonomous proteomics data resources