A Multi-Dataset Characterization of Window-based Hyperparameters for Deep CNN-driven sEMG Pattern Recognition

The control performance of myoelectric prostheses would not only depend on the feature extraction and classification algorithms but also on interactions of dynamic window-based hyper-parameters (WBHP) used to construct input signals. However, the relationship between these hyper-parameters and how they influence the performance of the convolutional neural networks (CNNs) during motor intent decoding has not been studied. Therefore, we investigated the impact of various combinations of WBHP (window length and overlap) employed for the construction of raw 2-dimensional (2D) surface electromyogram signals on the performance of CNNs when used for motion intent decoding. Moreover, we examined the relationship between the window length of the 2D sEMG and three commonly used CNN kernel sizes. To ensure high confidence in the findings, we implemented three CNNs which are variants of the existing models, and a newly proposed CNN model. Experimental analysis was conducted using three distinct benchmark databases, two from upper limb amputees and one from able-bodied subjects. The results demonstrate that the performance of the CNNs improved as the overlap between consecutively generated 2D signals increased, with 75% overlap yielding the optimal improvement by 12.62% accuracy and 39.60% F1-score compared to no overlap. Moreover, the CNNs performance was better for kernel size of seven than three and five across the databases. For the first time, we have established with multiple evidence that WBHP would substantially impact the decoding outcome and computational complexity of deep neural networks, and we anticipate that this may spur positive advancement in myoelectric control and related fields

Entwicklung einer Fully-Convolutional-Netzwerkarchitektur für die Detektion von defekten LED-Chips in Photolumineszenzbildern

Nowadays, light-emitting diodes (LEDs) can be found in a large variety of applications, from standard LEDs in domestic lighting solutions to advanced chip designs in automobiles, smart watches and video walls. The advances in chip design also affect the test processes, where the execution of certain contact measurements is exacerbated by ever decreasing chip dimensions or even rendered impossible due to the chip design. As an instance, wafer probing determines the electrical and optical properties of all LED chips on a wafer by contacting each and every chip with a prober needle. Chip designs without a contact pad on the surface, however, elude wafer probing and while electrical and optical properties can be determined by sample measurements, defective LED chips are distributed randomly over the wafer. Here, advanced data analysis methods provide a new approach to gather defect information from already available non-contact measurements. Photoluminescence measurements, for example, record a brightness image of an LED wafer, where conspicuous brightness values indicate defective chips. To extract these defect information from photoluminescence images, a computer-vision algorithm is required that transforms photoluminescence images into defect maps. In other words, each and every pixel of a photoluminescence image must be classifed into a class category via semantic segmentation, where so-called fully-convolutional-network algorithms represent the state-of-the-art method. However, the aforementioned task poses several challenges: on the one hand, each pixel in a photoluminescence image represents an LED chip and thus, pixel-fine output resolution is required. On the other hand, photoluminescence images show a variety of brightness values from wafer to wafer in addition to local areas of differing brightness. Additionally, clusters of defective chips assume various shapes, sizes and brightness gradients and thus, the algorithm must reliably recognise objects at multiple scales. Finally, not all salient brightness values correspond to defective LED chips, requiring the algorithm to distinguish salient brightness values corresponding to measurement artefacts, non-defect structures and defects, respectively. In this dissertation, a novel fully-convolutional-network architecture was developed that allows the accurate segmentation of defective LED chips in highly variable photoluminescence wafer images. For this purpose, the basic fully-convolutional-network architecture was modifed with regard to the given application and advanced architectural concepts were incorporated so as to enable a pixel-fine output resolution and a reliable segmentation of multiple scaled defect structures. Altogether, the developed dense ASPP Vaughan architecture achieved a pixel accuracy of 97.5 %, mean pixel accuracy of 96.2% and defect-class accuracy of 92.0 %, trained on a dataset of 136 input-label pairs and hereby showed that fully-convolutional-network algorithms can be a valuable contribution to data analysis in industrial manufacturing.Leuchtdioden (LEDs) werden heutzutage in einer Vielzahl von Anwendungen verbaut, angefangen bei Standard-LEDs in der Hausbeleuchtung bis hin zu technisch fortgeschrittenen Chip-Designs in Automobilen, Smartwatches und Videowänden. Die Weiterentwicklungen im Chip-Design beeinflussen auch die Testprozesse: Hierbei wird die Durchführung bestimmter Kontaktmessungen durch zunehmend verringerte Chip-Dimensionen entweder erschwert oder ist aufgrund des Chip-Designs unmöglich. Die sogenannteWafer-Prober-Messung beispielsweise ermittelt die elektrischen und optischen Eigenschaften aller LED-Chips auf einem Wafer, indem jeder einzelne Chip mit einer Messnadel kontaktiert und vermessen wird; Chip-Designs ohne Kontaktpad auf der Oberfläche können daher nicht durch die Wafer-Prober-Messung charakterisiert werden. Während die elektrischen und optischen Chip-Eigenschaften auch mittels Stichprobenmessungen bestimmt werden können, verteilen sich defekte LED-Chips zufällig über die Waferfläche. Fortgeschrittene Datenanalysemethoden ermöglichen hierbei einen neuen Ansatz, Defektinformationen aus bereits vorhandenen, berührungslosen Messungen zu gewinnen. Photolumineszenzmessungen, beispielsweise, erfassen ein Helligkeitsbild des LEDWafers, in dem auffällige Helligkeitswerte auf defekte LED-Chips hinweisen. Ein Bildverarbeitungsalgorithmus, der diese Defektinformationen aus Photolumineszenzbildern extrahiert und ein Defektabbild erstellt, muss hierzu jeden einzelnen Bildpunkt mittels semantischer Segmentation klassifizieren, eine Technik bei der sogenannte Fully-Convolutional-Netzwerke den Stand der Technik darstellen. Die beschriebene Aufgabe wird jedoch durch mehrere Faktoren erschwert: Einerseits entspricht jeder Bildpunkt eines Photolumineszenzbildes einem LED-Chip, so dass eine bildpunktfeine Auflösung der Netzwerkausgabe notwendig ist. Andererseits weisen Photolumineszenzbilder sowohl stark variierende Helligkeitswerte von Wafer zu Wafer als auch lokal begrenzte Helligkeitsabweichungen auf. Zusätzlich nehmen Defektanhäufungen unterschiedliche Formen, Größen und Helligkeitsgradienten an, weswegen der Algorithmus Objekte verschiedener Abmessungen zuverlässig erkennen können muss. Schlussendlich weisen nicht alle auffälligen Helligkeitswerte auf defekte LED-Chips hin, so dass der Algorithmus in der Lage sein muss zu unterscheiden, ob auffällige Helligkeitswerte mit Messartefakten, defekten LED-Chips oder defektfreien Strukturen korrelieren. In dieser Dissertation wurde eine neuartige Fully-Convolutional-Netzwerkarchitektur entwickelt, die die akkurate Segmentierung defekter LED-Chips in stark variierenden Photolumineszenzbildern von LED-Wafern ermöglicht. Zu diesem Zweck wurde die klassische Fully-Convolutional-Netzwerkarchitektur hinsichtlich der beschriebenen Anwendung angepasst und fortgeschrittene architektonische Konzepte eingearbeitet, um eine bildpunktfeine Ausgabeauflösung und eine zuverlässige Sementierung verschieden großer Defektstrukturen umzusetzen. Insgesamt erzielt die entwickelte dense-ASPP-Vaughan-Architektur eine Pixelgenauigkeit von 97,5 %, durchschnittliche Pixelgenauigkeit von 96,2% und eine Defektklassengenauigkeit von 92,0 %, trainiert mit einem Datensatz von 136 Bildern. Hiermit konnte gezeigt werden, dass Fully-Convolutional-Netzwerke eine wertvolle Erweiterung der Datenanalysemethoden sein können, die in der industriellen Fertigung eingesetzt werden

3D Shape Reconstruction of Knee Bones from Low Radiation X-ray Images Using Deep Learning

Understanding the bone kinematics of the human knee during dynamic motions is necessary to evaluate the pathological conditions, design knee prosthesis, orthosis and surgical treatments such as knee arthroplasty. Also, knee bone kinematics is essential to assess the biofidelity of the computational models. Kinematics of the human knee has been reported in the literature either using in vitro or in vivo methodologies. In vivo methodology is widely preferred due to biomechanical accuracies. However, it is challenging to obtain the kinematic data in vivo due to limitations in existing methods. One of the several existing methods used in such application is using X-ray fluoroscopy imaging, which allows for the non-invasive quantification of bone kinematics. In the fluoroscopy imaging method, due to procedural simplicity and low radiation exposure, single-plane fluoroscopy (SF) is the preferred tool to study the in vivo kinematics of the knee joint. Evaluation of the three-dimensional (3D) kinematics from the SF imagery is possible only if prior knowledge of the shape of the knee bones is available. The standard technique for acquiring the knee shape is to either segment Magnetic Resonance (MR) images, which is expensive to procure, or Computed Tomography (CT) images, which exposes the subjects to a heavy dose of ionizing radiation. Additionally, both the segmentation procedures are time-consuming and labour-intensive. An alternative technique that is rarely used is to reconstruct the knee shape from the SF images. It is less expensive than MR imaging, exposes the subjects to relatively lower radiation than CT imaging, and since the kinematic study and the shape reconstruction could be carried out using the same device, it could save a considerable amount of time for the researchers and the subjects. However, due to low exposure levels, SF images are often characterized by a low signal-to-noise ratio, making it difficult to extract the required information to reconstruct the shape accurately. In comparison to conventional X-ray images, SF images are of lower quality and have less detail. Additionally, existing methods for reconstructing the shape of the knee remain generally inconvenient since they need a highly controlled system: images must be captured from a calibrated device, care must be taken while positioning the subject's knee in the X-ray field to ensure image consistency, and user intervention and expert knowledge is required for 3D reconstruction. In an attempt to simplify the existing process, this thesis proposes a new methodology to reconstruct the 3D shape of the knee bones from multiple uncalibrated SF images using deep learning. During the image acquisition using the SF, the subjects in this approach can freely rotate their leg (in a fully extended, knee-locked position), resulting in several images captured in arbitrary poses. Relevant features are extracted from these images using a novel feature extraction technique before feeding it to a custom-built Convolutional Neural Network (CNN). The network, without further optimization, directly outputs a meshed 3D surface model of the subject's knee joint. The whole procedure could be completed in a few minutes. The robust feature extraction technique can effectively extract relevant information from a range of image qualities. When tested on eight unseen sets of SF images with known true geometry, the network reconstructed knee shape models with a shape error (RMSE) of 1.91± 0.30 mm for the femur, 2.3± 0.36 mm for the tibia and 3.3± 0.53 mm for the patella. The error was calculated after rigidly aligning (scale, rotation, and translation) each of the reconstructed shape models with the corresponding known true geometry (obtained through MRI segmentation). Based on a previous study that examined the influence of reconstructed shape accuracy on the precision of the evaluation of tibiofemoral kinematics, the shape accuracy of the proposed methodology might be adequate to precisely track the bone kinematics, although further investigation is required

Learning understandable classifier models.

The topic of this dissertation is the automation of the process of extracting understandable patterns and rules from data. An unprecedented amount of data is available to anyone with a computer connected to the Internet. The disciplines of Data Mining and Machine Learning have emerged over the last two decades to face this challenge. This has led to the development of many tools and methods. These tools often produce models that make very accurate predictions about previously unseen data. However, models built by the most accurate methods are usually hard to understand or interpret by humans. In consequence, they deliver only decisions, and are short of any explanations. Hence they do not directly lead to the acquisition of new knowledge. This dissertation contributes to bridging the gap between the accurate opaque models and those less accurate but more transparent for humans. This dissertation first defines the problem of learning from data. It surveys the state-of-the-art methods for supervised learning of both understandable and opaque models from data, as well as unsupervised methods that detect features present in the data. It describes popular methods of rule extraction from unintelligible models which rewrite them into an understandable form. Limitations of rule extraction are described. A novel definition of understandability which ties computational complexity and learning is provided to show that rule extraction is an NP-hard problem. Next, a discussion whether one can expect that even an accurate classifier has learned new knowledge. The survey ends with a presentation of two approaches to building of understandable classifiers. On the one hand, understandable models must be able to accurately describe relations in the data. On the other hand, often a description of the output of a system in terms of its input requires the introduction of intermediate concepts, called features. Therefore it is crucial to develop methods that describe the data with understandable features and are able to use those features to present the relation that describes the data. Novel contributions of this thesis follow the survey. Two families of rule extraction algorithms are considered. First, a method that can work with any opaque classifier is introduced. Artificial training patterns are generated in a mathematically sound way and used to train more accurate understandable models. Subsequently, two novel algorithms that require that the opaque model is a Neural Network are presented. They rely on access to the network\u27s weights and biases to induce rules encoded as Decision Diagrams. Finally, the topic of feature extraction is considered. The impact on imposing non-negativity constraints on the weights of a neural network is considered. It is proved that a three layer network with non-negative weights can shatter any given set of points and experiments are conducted to assess the accuracy and interpretability of such networks. Then, a novel path-following algorithm that finds robust sparse encodings of data is presented. In summary, this dissertation contributes to improved understandability of classifiers in several tangible and original ways. It introduces three distinct aspects of achieving this goal: infusion of additional patterns from the underlying pattern distribution into rule learners, the derivation of decision diagrams from neural networks, and achieving sparse coding with neural networks with non-negative weights

3D Reconstruction of Optical Building Images Based on Improved 3D-R2N2 Algorithm

Three-dimensional reconstruction technology is a key element in the construction of urban geospatial models. Addressing the current shortcomings in reconstruction accuracy, registration results convergence, reconstruction effectiveness, and convergence time of 3D reconstruction algorithms, we propose an optical building object 3D reconstruction method based on an improved 3D-R2N2 algorithm. The method inputs preprocessed optical remote sensing images into a Convolutional Neural Network (CNN) with dense connections for encoding, converting them into a low-dimensional feature matrix and adding a residual connection between every two convolutional layers to enhance network depth. Subsequently, 3D Long Short-Term Memory (3D-LSTM) units are used for transitional connections and cyclic learning. Each unit selectively adjusts or maintains its state, accepting feature vectors computed by the encoder. These data are further passed into a Deep Convolutional Neural Network (DCNN), where each 3D-LSTM hidden unit partially reconstructs output voxels. The DCNN convolutional layer employs an equally sized 3 3 3 convolutional kernel to process these feature data and decode them, thereby accomplishing the 3D reconstruction of buildings. Simultaneously, a pyramid pooling layer is introduced between the feature extraction module and the fully connected layer to enhance the performance of the algorithm. Experimental results indicate that, compared to the 3D-R2N2 algorithm, the SFM-enhanced AKAZE algorithm, the AISI-BIM algorithm, and the improved PMVS algorithm, the proposed algorithm improves the reconstruction effect by 5.3%, 7.8%, 7.4%, and 1.0% respectively. Furthermore, compared to other algorithms, the proposed algorithm exhibits higher efficiency in terms of registration result convergence and reconstruction time, with faster computational speed. This research contributes to the enhancement of building 3D reconstruction technology, laying a foundation for future research in deep learning applications in the architectural field

CT-LungNet: A Deep Learning Framework for Precise Lung Tissue Segmentation in 3D Thoracic CT Scans

Segmentation of lung tissue in computed tomography (CT) images is a precursor to most pulmonary image analysis applications. Semantic segmentation methods using deep learning have exhibited top-tier performance in recent years, however designing accurate and robust segmentation models for lung tissue is challenging due to the variations in shape, size, and orientation. Additionally, medical image artifacts and noise can affect lung tissue segmentation and degrade the accuracy of downstream analysis. The practicality of current deep learning methods for lung tissue segmentation is limited as they require significant computational resources and may not be easily deployable in clinical settings. This paper presents a fully automatic method that identifies the lungs in three-dimensional (3D) pulmonary CT images using deep networks and transfer learning. We introduce (1) a novel 2.5-dimensional image representation from consecutive CT slices that succinctly represents volumetric information and (2) a U-Net architecture equipped with pre-trained InceptionV3 blocks to segment 3D CT scans while maintaining the number of learnable parameters as low as possible. Our method was quantitatively assessed using one public dataset, LUNA16, for training and testing and two public datasets, namely, VESSEL12 and CRPF, only for testing. Due to the low number of learnable parameters, our method achieved high generalizability to the unseen VESSEL12 and CRPF datasets while obtaining superior performance over Luna16 compared to existing methods (Dice coefficients of 99.7, 99.1, and 98.8 over LUNA16, VESSEL12, and CRPF datasets, respectively). We made our method publicly accessible via a graphical user interface at medvispy.ee.kntu.ac.ir

Application of a Dense Fusion Attention Network in Fault Diagnosis of Centrifugal Fan

Although the deep learning recognition model has been widely used in the condition monitoring of rotating machinery. However, it is still a challenge to understand the correspondence between the structure and function of the model and the diagnosis process. Therefore, this paper discusses embedding distributed attention modules into dense connections instead of traditional dense cascading operations. It not only decouples the influence of space and channel on fault feature adaptive recalibration feature weights, but also forms a fusion attention function. The proposed dense fusion focuses on the visualization of the network diagnosis process, which increases the interpretability of model diagnosis. How to continuously and effectively integrate different functions to enhance the ability to extract fault features and the ability to resist noise is answered. Centrifugal fan fault data is used to verify this network. Experimental results show that the network has stronger diagnostic performance than other advanced fault diagnostic models

Automated machine learning plankton taxonomy pipeline

Plankton taxonomy is considered a multi-class classification problem. The current state-of-the-art developments in machine learning and phytoplankton taxonomy, such as MorphoCluster, include using a convolutional neural network as a feature extractor and Hierarchical Density-Based Clustering for the classification of plankton and identification of outliers. These convolutional feature extraction algorithms achieved accuracies of 0.78 during the classification process. However, these feature extraction models are trained on clean datasets. They perform very well when analysing previously encountered and well-defined classes but do not perform well when tested on raw datasets expected in field deployment. Raw plankton datasets are unbalanced; whereas some classes only have one or two samples, others can have thousands. They also exhibit many inter-class similarities with significant size differences. The data can also be in the form of low-resolution, noisy images. Phytoplankton species are also highly biodiverse, meaning that there is always a higher chance of a network encountering unknown sample types. Some samples, such as the various body parts of organisms, are easily confused with the species itself. Marine experts classifying plankton tend to group ambiguous samples according to the highest order to which they are confident they belong. This system leads to a dataset containing conflicting classes and forces the feature extraction network to overfit when training. This research aims to address these spatial issues and present a feature extraction methodology built upon existing research and novel concepts. The proposed algorithm uses feature extraction methods designed around real-world sample sets and offers an alternative approach to optimizing the features extracted and supplied to the clustering algorithm. The proposed feature extraction methods achieved scores of 0.821 when tested on the same datasets as the general feature extractor. The algorithm also consists of Auxiliary SoftMax classification branches which indicate the class prediction obtained by the feature extraction models. These branches allow for autonomous labelling of the clusters formed during the HDBSCAN algorithm being performed on the extracted features. This results in a fully automated semi-supervised plankton taxonomy pipeline which achieves a classification score of 0.775 on a real-life sample set.Thesis (MA) -- Faculty of Engineering, the Built Environment, and Technology, 202

Leveraging Artificial Intelligence and Geomechanical Data for Accurate Shear Stress Prediction in CO2 Sequestration within Saline Aquifers (Smart Proxy Modeling)

This research builds upon the success of a previous project that used a Smart Proxy Model (SPM) to predict pressure and saturation in Carbon Capture and Storage (CCS) operations into saline aquifers. The Smart Proxy Model is a data-driven machine learning model that can replicate the output of a sophisticated numerical simulation model for each time step in a short amount of time, using Artificial Intelligence (AI) and large volumes of subsurface data. This study aims to develop the Smart Proxy Model further by incorporating geomechanical datadriven techniques to predict shear stress by using a neural network, specifically through supervised learning, to construct Smart Proxy Models, which are critical to ensuring the safety and effectiveness of Carbon Capture and Storage operations. By training the Smart Proxy Model with reservoir simulations that incorporate varying geological properties and geomechanical data, we will be able to predict the distribution of shear stress. The ability to accurately predict shear stress is crucial to mitigating the potential risks associated with Carbon Capture and Storage operations. The development of a geomechanical Smart Proxy Model will enable more efficient and reliable subsurface modeling decisions in Carbon Capture and Storage operations, ultimately contributing to the safe and effective storage of CO2 and the global effort to combat climate change