10,131 research outputs found
Identification of Design Principles
This report identifies those design principles for a (possibly new) query and transformation
language for the Web supporting inference that are considered essential. Based upon these
design principles an initial strawman is selected. Scenarios for querying the Semantic Web
illustrate the design principles and their reflection in the initial strawman, i.e., a first draft of
the query language to be designed and implemented by the REWERSE working group I4
Web and Semantic Web Query Languages
A number of techniques have been developed to facilitate
powerful data retrieval on the Web and Semantic Web. Three categories
of Web query languages can be distinguished, according to the format
of the data they can retrieve: XML, RDF and Topic Maps. This article
introduces the spectrum of languages falling into these categories
and summarises their salient aspects. The languages are introduced using
common sample data and query types. Key aspects of the query
languages considered are stressed in a conclusion
RDF Querying
Reactive Web systems, Web services, and Web-based publish/
subscribe systems communicate events as XML messages, and in
many cases require composite event detection: it is not sufficient to react
to single event messages, but events have to be considered in relation to
other events that are received over time.
Emphasizing language design and formal semantics, we describe the
rule-based query language XChangeEQ for detecting composite events.
XChangeEQ is designed to completely cover and integrate the four complementary
querying dimensions: event data, event composition, temporal
relationships, and event accumulation. Semantics are provided as
model and fixpoint theories; while this is an established approach for rule
languages, it has not been applied for event queries before
Declarative Ajax Web Applications through SQL++ on a Unified Application State
Implementing even a conceptually simple web application requires an
inordinate amount of time. FORWARD addresses three problems that reduce
developer productivity: (a) Impedance mismatch across the multiple languages
used at different tiers of the application architecture. (b) Distributed data
access across the multiple data sources of the application (SQL database, user
input of the browser page, session data in the application server, etc). (c)
Asynchronous, incremental modification of the pages, as performed by Ajax
actions.
FORWARD belongs to a novel family of web application frameworks that attack
impedance mismatch by offering a single unifying language. FORWARD's language
is SQL++, a minimally extended SQL. FORWARD's architecture is based on two
novel cornerstones: (a) A Unified Application State (UAS), which is a virtual
database over the multiple data sources. The UAS is accessed via distributed
SQL++ queries, therefore resolving the distributed data access problem. (b)
Declarative page specifications, which treat the data displayed by pages as
rendered SQL++ page queries. The resulting pages are automatically
incrementally modified by FORWARD. User input on the page becomes part of the
UAS.
We show that SQL++ captures the semi-structured nature of web pages and
subsumes the data models of two important data sources of the UAS: SQL
databases and JavaScript components. We show that simple markup is sufficient
for creating Ajax displays and for modeling user input on the page as UAS data
sources. Finally, we discuss the page specification syntax and semantics that
are needed in order to avoid race conditions and conflicts between the user
input and the automated Ajax page modifications.
FORWARD has been used in the development of eight commercial and academic
applications. An alpha-release web-based IDE (itself built in FORWARD) enables
development in the cloud.Comment: Proceedings of the 14th International Symposium on Database
Programming Languages (DBPL 2013), August 30, 2013, Riva del Garda, Trento,
Ital
Survey over Existing Query and Transformation Languages
A widely acknowledged obstacle for realizing the vision of the Semantic Web is the inability
of many current Semantic Web approaches to cope with data available in such diverging
representation formalisms as XML, RDF, or Topic Maps. A common query language is the first
step to allow transparent access to data in any of these formats. To further the understanding
of the requirements and approaches proposed for query languages in the conventional as well
as the Semantic Web, this report surveys a large number of query languages for accessing
XML, RDF, or Topic Maps. This is the first systematic survey to consider query languages from
all these areas. From the detailed survey of these query languages, a common classification
scheme is derived that is useful for understanding and differentiating languages within and
among all three areas
Knowledge Rich Natural Language Queries over Structured Biological Databases
Increasingly, keyword, natural language and NoSQL queries are being used for
information retrieval from traditional as well as non-traditional databases
such as web, document, image, GIS, legal, and health databases. While their
popularity are undeniable for obvious reasons, their engineering is far from
simple. In most part, semantics and intent preserving mapping of a well
understood natural language query expressed over a structured database schema
to a structured query language is still a difficult task, and research to tame
the complexity is intense. In this paper, we propose a multi-level
knowledge-based middleware to facilitate such mappings that separate the
conceptual level from the physical level. We augment these multi-level
abstractions with a concept reasoner and a query strategy engine to dynamically
link arbitrary natural language querying to well defined structured queries. We
demonstrate the feasibility of our approach by presenting a Datalog based
prototype system, called BioSmart, that can compute responses to arbitrary
natural language queries over arbitrary databases once a syntactic
classification of the natural language query is made
Motivated proteins: a web application for studying small three-dimensional protein motifs
<b>BACKGROUND:</b> Small loop-shaped motifs are common constituents of the three-dimensional structure of proteins. Typically they comprise between three and seven amino acid residues, and are defined by a combination of dihedral angles and hydrogen bonding partners. The most abundant of these are alphabeta-motifs, asx-motifs, asx-turns, beta-bulges, beta-bulge loops, beta-turns, nests, niches, Schellmann loops, ST-motifs, ST-staples and ST-turns.We have constructed a database of such motifs from a range of high-quality protein structures and built a web application as a visual interface to this. <b>DESCRIPTION:</b> The web application, Motivated Proteins, provides access to these 12 motifs (with 48 sub-categories) in a database of over 400 representative proteins. Queries can be made for specific categories or sub-categories of motif, motifs in the vicinity of ligands, motifs which include part of an enzyme active site, overlapping motifs, or motifs which include a particular amino acid sequence. Individual proteins can be specified, or, where appropriate, motifs for all proteins listed. The results of queries are presented in textual form as an (X)HTML table, and may be saved as parsable plain text or XML. Motifs can be viewed and manipulated either individually or in the context of the protein in the Jmol applet structural viewer. Cartoons of the motifs imposed on a linear representation of protein secondary structure are also provided. Summary information for the motifs is available, as are histograms of amino acid distribution, and graphs of dihedral angles at individual positions in the motifs. <b>CONCLUSION:</b> Motivated Proteins is a publicly and freely accessible web application that enables protein scientists to study small three-dimensional motifs without requiring knowledge of either Structured Query Language or the underlying database schem
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