On controllability of neuronal networks with constraints on the average of control gains

Control gains play an important role in the control of a natural or a technical system since they reflect how much resource is required to optimize a certain control objective. This paper is concerned with the controllability of neuronal networks with constraints on the average value of the control gains injected in driver nodes, which are in accordance with engineering and biological backgrounds. In order to deal with the constraints on control gains, the controllability problem is transformed into a constrained optimization problem (COP). The introduction of the constraints on the control gains unavoidably leads to substantial difficulty in finding feasible as well as refining solutions. As such, a modified dynamic hybrid framework (MDyHF) is developed to solve this COP, based on an adaptive differential evolution and the concept of Pareto dominance. By comparing with statistical methods and several recently reported constrained optimization evolutionary algorithms (COEAs), we show that our proposed MDyHF is competitive and promising in studying the controllability of neuronal networks. Based on the MDyHF, we proceed to show the controlling regions under different levels of constraints. It is revealed that we should allocate the control gains economically when strong constraints are considered. In addition, it is found that as the constraints become more restrictive, the driver nodes are more likely to be selected from the nodes with a large degree. The results and methods presented in this paper will provide useful insights into developing new techniques to control a realistic complex network efficiently

Synchronisation effects on the behavioural performance and information dynamics of a simulated minimally cognitive robotic agent

Oscillatory activity is ubiquitous in nervous systems, with solid evidence that synchronisation mechanisms underpin cognitive processes. Nevertheless, its informational content and relationship with behaviour are still to be fully understood. In addition, cognitive systems cannot be properly appreciated without taking into account brain–body– environment interactions. In this paper, we developed a model based on the Kuramoto Model of coupled phase oscillators to explore the role of neural synchronisation in the performance of a simulated robotic agent in two different minimally cognitive tasks. We show that there is a statistically significant difference in performance and evolvability depending on the synchronisation regime of the network. In both tasks, a combination of information flow and dynamical analyses show that networks with a definite, but not too strong, propensity for synchronisation are more able to reconfigure, to organise themselves functionally and to adapt to different behavioural conditions. The results highlight the asymmetry of information flow and its behavioural correspondence. Importantly, it also shows that neural synchronisation dynamics, when suitably flexible and reconfigurable, can generate minimally cognitive embodied behaviour

Consciousness operates beyond the timescale for discerning time intervals: implications for Q-mind theories and analysis of quantum decoherence in brain

This paper presents in details how the subjective time is constructed by the brain cortex via reading packets of information called "time labels", produced by the right basal ganglia that act as brain timekeeper. Psychophysiological experiments have measured the subjective "time quanta" to be 40 ms and show that consciousness operates beyond that scale - an important result having profound implications for the Q-mind theory. Although in most current mainstream biophysics research on cognitive processes, the brain is modelled as a neural network obeying classical physics, Penrose (1989, 1997) and others have argued that quantum mechanics may play an essential role, and that successful brain simulations can only be performed with a quantum computer. Tegmark (2000) showed that make-or-break issue for the quantum models of mind is whether the relevant degrees of freedom of the brain can be sufficiently isolated to retain their quantum coherence and tried to settle the issue with detailed calculations of the relevant decoherence rates. He concluded that the mind is classical rather than quantum system, however his reasoning is based on biological inconsistency. Here we present detailed exposition of molecular neurobiology and define the dynamical timescale of cognitive processes linked to consciousness to be 10-15 ps showing that macroscopic quantum coherent phenomena in brain are not ruled out, and even may provide insight in understanding life, information and consciousness

Coverage Protocols for Wireless Sensor Networks: Review and Future Directions

The coverage problem in wireless sensor networks (WSNs) can be generally defined as a measure of how effectively a network field is monitored by its sensor nodes. This problem has attracted a lot of interest over the years and as a result, many coverage protocols were proposed. In this survey, we first propose a taxonomy for classifying coverage protocols in WSNs. Then, we classify the coverage protocols into three categories (i.e. coverage aware deployment protocols, sleep scheduling protocols for flat networks, and cluster-based sleep scheduling protocols) based on the network stage where the coverage is optimized. For each category, relevant protocols are thoroughly reviewed and classified based on the adopted coverage techniques. Finally, we discuss open issues (and recommend future directions to resolve them) associated with the design of realistic coverage protocols. Issues such as realistic sensing models, realistic energy consumption models, realistic connectivity models and sensor localization are covered

Data-driven modelling of biological multi-scale processes

Biological processes involve a variety of spatial and temporal scales. A holistic understanding of many biological processes therefore requires multi-scale models which capture the relevant properties on all these scales. In this manuscript we review mathematical modelling approaches used to describe the individual spatial scales and how they are integrated into holistic models. We discuss the relation between spatial and temporal scales and the implication of that on multi-scale modelling. Based upon this overview over state-of-the-art modelling approaches, we formulate key challenges in mathematical and computational modelling of biological multi-scale and multi-physics processes. In particular, we considered the availability of analysis tools for multi-scale models and model-based multi-scale data integration. We provide a compact review of methods for model-based data integration and model-based hypothesis testing. Furthermore, novel approaches and recent trends are discussed, including computation time reduction using reduced order and surrogate models, which contribute to the solution of inference problems. We conclude the manuscript by providing a few ideas for the development of tailored multi-scale inference methods.Comment: This manuscript will appear in the Journal of Coupled Systems and Multiscale Dynamics (American Scientific Publishers

A Likelihood-Free Inference Framework for Population Genetic Data using Exchangeable Neural Networks

An explosion of high-throughput DNA sequencing in the past decade has led to a surge of interest in population-scale inference with whole-genome data. Recent work in population genetics has centered on designing inference methods for relatively simple model classes, and few scalable general-purpose inference techniques exist for more realistic, complex models. To achieve this, two inferential challenges need to be addressed: (1) population data are exchangeable, calling for methods that efficiently exploit the symmetries of the data, and (2) computing likelihoods is intractable as it requires integrating over a set of correlated, extremely high-dimensional latent variables. These challenges are traditionally tackled by likelihood-free methods that use scientific simulators to generate datasets and reduce them to hand-designed, permutation-invariant summary statistics, often leading to inaccurate inference. In this work, we develop an exchangeable neural network that performs summary statistic-free, likelihood-free inference. Our framework can be applied in a black-box fashion across a variety of simulation-based tasks, both within and outside biology. We demonstrate the power of our approach on the recombination hotspot testing problem, outperforming the state-of-the-art.Comment: 9 pages, 8 figure