Comparing MapReduce and pipeline implementations for counting triangles

A common method to define a parallel solution for a computational problem consists in finding a way to use the Divide and Conquer paradigm in order to have processors acting on its own data and scheduled in a parallel fashion. MapReduce is a programming model that follows this paradigm, and allows for the definition of efficient solutions by both decomposing a problem into steps on subsets of the input data and combining the results of each step to produce final results. Albeit used for the implementation of a wide variety of computational problems, MapReduce performance can be negatively affected whenever the replication factor grows or the size of the input is larger than the resources available at each processor. In this paper we show an alternative approach to implement the Divide and Conquer paradigm, named dynamic pipeline. The main features of dynamic pipelines are illustrated on a parallel implementation of the well-known problem of counting triangles in a graph. This problem is especially interesting either when the input graph does not fit in memory or is dynamically generated. To evaluate the properties of pipeline, a dynamic pipeline of processes and an ad-hoc version of MapReduce are implemented in the language Go, exploiting its ability to deal with channels and spawned processes. An empirical evaluation is conducted on graphs of different topologies, sizes, and densities. Observed results suggest that dynamic pipelines allows for an efficient implementation of the problem of counting triangles in a graph, particularly, in dense and large graphs, drastically reducing the execution time with respect to the MapReduce implementation.Peer ReviewedPostprint (published version

Feature selection in high-dimensional dataset using MapReduce

This paper describes a distributed MapReduce implementation of the minimum Redundancy Maximum Relevance algorithm, a popular feature selection method in bioinformatics and network inference problems. The proposed approach handles both tall/narrow and wide/short datasets. We further provide an open source implementation based on Hadoop/Spark, and illustrate its scalability on datasets involving millions of observations or features

Parallel Hierarchical Affinity Propagation with MapReduce

The accelerated evolution and explosion of the Internet and social media is generating voluminous quantities of data (on zettabyte scales). Paramount amongst the desires to manipulate and extract actionable intelligence from vast big data volumes is the need for scalable, performance-conscious analytics algorithms. To directly address this need, we propose a novel MapReduce implementation of the exemplar-based clustering algorithm known as Affinity Propagation. Our parallelization strategy extends to the multilevel Hierarchical Affinity Propagation algorithm and enables tiered aggregation of unstructured data with minimal free parameters, in principle requiring only a similarity measure between data points. We detail the linear run-time complexity of our approach, overcoming the limiting quadratic complexity of the original algorithm. Experimental validation of our clustering methodology on a variety of synthetic and real data sets (e.g. images and point data) demonstrates our competitiveness against other state-of-the-art MapReduce clustering techniques

The Family of MapReduce and Large Scale Data Processing Systems

In the last two decades, the continuous increase of computational power has produced an overwhelming flow of data which has called for a paradigm shift in the computing architecture and large scale data processing mechanisms. MapReduce is a simple and powerful programming model that enables easy development of scalable parallel applications to process vast amounts of data on large clusters of commodity machines. It isolates the application from the details of running a distributed program such as issues on data distribution, scheduling and fault tolerance. However, the original implementation of the MapReduce framework had some limitations that have been tackled by many research efforts in several followup works after its introduction. This article provides a comprehensive survey for a family of approaches and mechanisms of large scale data processing mechanisms that have been implemented based on the original idea of the MapReduce framework and are currently gaining a lot of momentum in both research and industrial communities. We also cover a set of introduced systems that have been implemented to provide declarative programming interfaces on top of the MapReduce framework. In addition, we review several large scale data processing systems that resemble some of the ideas of the MapReduce framework for different purposes and application scenarios. Finally, we discuss some of the future research directions for implementing the next generation of MapReduce-like solutions.Comment: arXiv admin note: text overlap with arXiv:1105.4252 by other author

A Big Data Analyzer for Large Trace Logs

Current generation of Internet-based services are typically hosted on large data centers that take the form of warehouse-size structures housing tens of thousands of servers. Continued availability of a modern data center is the result of a complex orchestration among many internal and external actors including computing hardware, multiple layers of intricate software, networking and storage devices, electrical power and cooling plants. During the course of their operation, many of these components produce large amounts of data in the form of event and error logs that are essential not only for identifying and resolving problems but also for improving data center efficiency and management. Most of these activities would benefit significantly from data analytics techniques to exploit hidden statistical patterns and correlations that may be present in the data. The sheer volume of data to be analyzed makes uncovering these correlations and patterns a challenging task. This paper presents BiDAl, a prototype Java tool for log-data analysis that incorporates several Big Data technologies in order to simplify the task of extracting information from data traces produced by large clusters and server farms. BiDAl provides the user with several analysis languages (SQL, R and Hadoop MapReduce) and storage backends (HDFS and SQLite) that can be freely mixed and matched so that a custom tool for a specific task can be easily constructed. BiDAl has a modular architecture so that it can be extended with other backends and analysis languages in the future. In this paper we present the design of BiDAl and describe our experience using it to analyze publicly-available traces from Google data clusters, with the goal of building a realistic model of a complex data center.Comment: 26 pages, 10 figure

Scheduling MapReduce Jobs under Multi-Round Precedences

We consider non-preemptive scheduling of MapReduce jobs with multiple tasks in the practical scenario where each job requires several map-reduce rounds. We seek to minimize the average weighted completion time and consider scheduling on identical and unrelated parallel processors. For identical processors, we present LP-based O(1)-approximation algorithms. For unrelated processors, the approximation ratio naturally depends on the maximum number of rounds of any job. Since the number of rounds per job in typical MapReduce algorithms is a small constant, our scheduling algorithms achieve a small approximation ratio in practice. For the single-round case, we substantially improve on previously best known approximation guarantees for both identical and unrelated processors. Moreover, we conduct an experimental analysis and compare the performance of our algorithms against a fast heuristic and a lower bound on the optimal solution, thus demonstrating their promising practical performance

Scather: programming with multi-party computation and MapReduce

We present a prototype of a distributed computational infrastructure, an associated high level programming language, and an underlying formal framework that allow multiple parties to leverage their own cloud-based computational resources (capable of supporting MapReduce [27] operations) in concert with multi-party computation (MPC) to execute statistical analysis algorithms that have privacy-preserving properties. Our architecture allows a data analyst unfamiliar with MPC to: (1) author an analysis algorithm that is agnostic with regard to data privacy policies, (2) to use an automated process to derive algorithm implementation variants that have different privacy and performance properties, and (3) to compile those implementation variants so that they can be deployed on an infrastructures that allows computations to take place locally within each participant’s MapReduce cluster as well as across all the participants’ clusters using an MPC protocol. We describe implementation details of the architecture, discuss and demonstrate how the formal framework enables the exploration of tradeoffs between the efficiency and privacy properties of an analysis algorithm, and present two example applications that illustrate how such an infrastructure can be utilized in practice.This work was supported in part by NSF Grants: #1430145, #1414119, #1347522, and #1012798