Computational exploration of molecular receptive fields in the olfactory bulb reveals a glomerulus-centric chemical map

© The Author(s) 2020. This article is licensed under a Creative Commons Attribution 4.0 International License. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.Progress in olfactory research is currently hampered by incomplete knowledge about chemical receptive ranges of primary receptors. Moreover, the chemical logic underlying the arrangement of computational units in the olfactory bulb has still not been resolved. We undertook a large-scale approach at characterising molecular receptive ranges (MRRs) of glomeruli in the dorsal olfactory bulb (dOB) innervated by the MOR18-2 olfactory receptor, also known as Olfr78, with human ortholog OR51E2. Guided by an iterative approach that combined biological screening and machine learning, we selected 214 odorants to characterise the response of MOR18-2 and its neighbouring glomeruli. We found that a combination of conventional physico-chemical and vibrational molecular descriptors performed best in predicting glomerular responses using nonlinear Support-Vector Regression. We also discovered several previously unknown odorants activating MOR18-2 glomeruli, and obtained detailed MRRs of MOR18-2 glomeruli and their neighbours. Our results confirm earlier findings that demonstrated tunotopy, that is, glomeruli with similar tuning curves tend to be located in spatial proximity in the dOB. In addition, our results indicate chemotopy, that is, a preference for glomeruli with similar physico-chemical MRR descriptions being located in spatial proximity. Together, these findings suggest the existence of a partial chemical map underlying glomerular arrangement in the dOB. Our methodology that combines machine learning and physiological measurements lights the way towards future high-throughput studies to deorphanise and characterise structure-activity relationships in olfaction.Peer reviewe

Interactive visualisation and exploration of biological data

International audienceno abstrac

Vertical wind profile characterization and identification of patterns based on a shape clustering algorithm

Wind power plants are becoming a generally accepted resource in the generation mix of many utilities. At the same time, the size and the power rating of individual wind turbines have increased considerably. Under these circumstances, the sector is increasingly demanding an accurate characterization of vertical wind speed profiles to estimate properly the incoming wind speed at the rotor swept area and, consequently, assess the potential for a wind power plant site. The present paper describes a shape-based clustering characterization and visualization of real vertical wind speed data. The proposed solution allows us to identify the most likely vertical wind speed patterns for a specific location based on real wind speed measurements. Moreover, this clustering approach also provides characterization and classification of such vertical wind profiles. This solution is highly suitable for a large amount of data collected by remote sensing equipment, where wind speed values at different heights within the rotor swept area are available for subsequent analysis. The methodology is based on z-normalization, shape-based distance metric solution and the Ward-hierarchical clustering method. Real vertical wind speed profile data corresponding to a Spanish wind power plant and collected by using a commercialWindcube equipment during several months are used to assess the proposed characterization and clustering process, involving more than 100000 wind speed data values. All analyses have been implemented using open-source R-software. From the results, at least four different vertical wind speed patterns are identified to characterize properly over 90% of the collected wind speed data along the day. Therefore, alternative analytical function criteria should be subsequently proposed for vertical wind speed characterization purposes.The authors are grateful for the financial support from the Spanish Ministry of the Economy and Competitiveness and the European Union —ENE2016-78214-C2-2-R—and the Spanish Education, Culture and Sport Ministry —FPU16/042