35,049 research outputs found
EC3: Combining Clustering and Classification for Ensemble Learning
Classification and clustering algorithms have been proved to be successful
individually in different contexts. Both of them have their own advantages and
limitations. For instance, although classification algorithms are more powerful
than clustering methods in predicting class labels of objects, they do not
perform well when there is a lack of sufficient manually labeled reliable data.
On the other hand, although clustering algorithms do not produce label
information for objects, they provide supplementary constraints (e.g., if two
objects are clustered together, it is more likely that the same label is
assigned to both of them) that one can leverage for label prediction of a set
of unknown objects. Therefore, systematic utilization of both these types of
algorithms together can lead to better prediction performance. In this paper,
We propose a novel algorithm, called EC3 that merges classification and
clustering together in order to support both binary and multi-class
classification. EC3 is based on a principled combination of multiple
classification and multiple clustering methods using an optimization function.
We theoretically show the convexity and optimality of the problem and solve it
by block coordinate descent method. We additionally propose iEC3, a variant of
EC3 that handles imbalanced training data. We perform an extensive experimental
analysis by comparing EC3 and iEC3 with 14 baseline methods (7 well-known
standalone classifiers, 5 ensemble classifiers, and 2 existing methods that
merge classification and clustering) on 13 standard benchmark datasets. We show
that our methods outperform other baselines for every single dataset, achieving
at most 10% higher AUC. Moreover our methods are faster (1.21 times faster than
the best baseline), more resilient to noise and class imbalance than the best
baseline method.Comment: 14 pages, 7 figures, 11 table
Paradigm of tunable clustering using binarization of consensus partition matrices (Bi-CoPaM) for gene discovery
Copyright @ 2013 Abu-Jamous et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits
unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.Clustering analysis has a growing role in the study of co-expressed genes for gene discovery. Conventional binary and fuzzy clustering do not embrace the biological reality that some genes may be irrelevant for a problem and not be assigned to a cluster, while other genes may participate in several biological functions and should simultaneously belong to multiple clusters. Also, these algorithms cannot generate tight clusters that focus on their cores or wide clusters that overlap and contain all possibly relevant genes. In this paper, a new clustering paradigm is proposed. In this paradigm, all three eventualities of a gene being exclusively assigned to a single cluster, being assigned to multiple clusters, and being not assigned to any cluster are possible. These possibilities are realised through the primary novelty of the introduction of tunable binarization techniques. Results from multiple clustering experiments are aggregated to generate one fuzzy consensus partition matrix (CoPaM), which is then binarized to obtain the final binary partitions. This is referred to as Binarization of Consensus Partition Matrices (Bi-CoPaM). The method has been tested with a set of synthetic datasets and a set of five real yeast cell-cycle datasets. The results demonstrate its validity in generating relevant tight, wide, and complementary clusters that can meet requirements of different gene discovery studies.National Institute for Health Researc
Network Lasso: Clustering and Optimization in Large Graphs
Convex optimization is an essential tool for modern data analysis, as it
provides a framework to formulate and solve many problems in machine learning
and data mining. However, general convex optimization solvers do not scale
well, and scalable solvers are often specialized to only work on a narrow class
of problems. Therefore, there is a need for simple, scalable algorithms that
can solve many common optimization problems. In this paper, we introduce the
\emph{network lasso}, a generalization of the group lasso to a network setting
that allows for simultaneous clustering and optimization on graphs. We develop
an algorithm based on the Alternating Direction Method of Multipliers (ADMM) to
solve this problem in a distributed and scalable manner, which allows for
guaranteed global convergence even on large graphs. We also examine a
non-convex extension of this approach. We then demonstrate that many types of
problems can be expressed in our framework. We focus on three in particular -
binary classification, predicting housing prices, and event detection in time
series data - comparing the network lasso to baseline approaches and showing
that it is both a fast and accurate method of solving large optimization
problems
Enumerating Maximal Bicliques from a Large Graph using MapReduce
We consider the enumeration of maximal bipartite cliques (bicliques) from a
large graph, a task central to many practical data mining problems in social
network analysis and bioinformatics. We present novel parallel algorithms for
the MapReduce platform, and an experimental evaluation using Hadoop MapReduce.
Our algorithm is based on clustering the input graph into smaller sized
subgraphs, followed by processing different subgraphs in parallel. Our
algorithm uses two ideas that enable it to scale to large graphs: (1) the
redundancy in work between different subgraph explorations is minimized through
a careful pruning of the search space, and (2) the load on different reducers
is balanced through the use of an appropriate total order among the vertices.
Our evaluation shows that the algorithm scales to large graphs with millions of
edges and tens of mil- lions of maximal bicliques. To our knowledge, this is
the first work on maximal biclique enumeration for graphs of this scale.Comment: A preliminary version of the paper was accepted at the Proceedings of
the 3rd IEEE International Congress on Big Data 201
LATTE: Application Oriented Social Network Embedding
In recent years, many research works propose to embed the network structured
data into a low-dimensional feature space, where each node is represented as a
feature vector. However, due to the detachment of embedding process with
external tasks, the learned embedding results by most existing embedding models
can be ineffective for application tasks with specific objectives, e.g.,
community detection or information diffusion. In this paper, we propose study
the application oriented heterogeneous social network embedding problem.
Significantly different from the existing works, besides the network structure
preservation, the problem should also incorporate the objectives of external
applications in the objective function. To resolve the problem, in this paper,
we propose a novel network embedding framework, namely the "appLicAtion
orienTed neTwork Embedding" (Latte) model. In Latte, the heterogeneous network
structure can be applied to compute the node "diffusive proximity" scores,
which capture both local and global network structures. Based on these computed
scores, Latte learns the network representation feature vectors by extending
the autoencoder model model to the heterogeneous network scenario, which can
also effectively unite the objectives of network embedding and external
application tasks. Extensive experiments have been done on real-world
heterogeneous social network datasets, and the experimental results have
demonstrated the outstanding performance of Latte in learning the
representation vectors for specific application tasks.Comment: 11 Pages, 12 Figures, 1 Tabl
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