A Bayesian Belief Network to assess rate of changes in coral reef ecosystems

It is crucial to identify sources of impacts and degradation to maintain functions and services that the physical structure of coral reef provides. Here, a Bayesian Network approach is used to evaluate effects that anthropogenic and climate change disturbances have on coral reef structure. The network was constructed on knowledge derived from the literature and elicited from experts, and parameterised on independent data. Evaluation of the model was conducted through sensitivity analyses and data integration was fundamental to obtain a balanced dataset. Scenario analyses, conducted to assess the effects of stressors on the reef framework state, suggested that calcifying organisms and carbonate production, rather than bioerosion, had the largest influence on the reef carbonate budgetary state. Despite the overall budget remaining positive, anthropogenic pressures, particularly deterioration of water quality, affected reef carbonate production, representing a warning signal for potential changes in the reef state

STATE-AND-TRANSITION MODELING AND ADAPTIVE MANAGEMENT: TOOLS FOR FUTURE CO-DEVELOPMENT OF MADAGASCAR’S NATURAL RESOURCES AND PEOPLE

Madagascar’s terrestrial and aquatic ecosystems have long supported a unique set of ecological communities, many of whom are endemic to the tropical island. Those same ecosystems have been a source of valuable natural resources to some of the poorest people in the world. Nevertheless, with pride, ingenuity and resourcefulness, the Malagasy people of the southwest coast, being of Vezo identity, subsist with low development fishing techniques aimed at an increasingly threatened host of aquatic seascapes. Mangroves, sea grass bed, and coral reefs of the region are under increased pressure from the general populace for both food provisions and support of economic opportunity. Besides purveyors and extractors, the coastal waters are also subject to a number of natural stressors, including cyclones and invasive, predator species of both flora and fauna. In addition, the aquatic ecosystems of the region are undergoing increased nutrient and sediment runoff due, in part, to Madagascar’s heavy reliance on land for agricultural purposes (Scales, 2011). Moreover, its coastal waters, like so many throughout the world, have been proven to be warming at an alarming rate over the past few decades. In recognizing the intimate interconnectedness of the both the social and ecological systems, conservation organizations have invoked a host of complimentary conservation and social development efforts with the dual aim of preserving or restoring the health of both the coastal ecosystems and the people of the region. This paper provides a way of thinking more holistically about the social-ecological system within a resiliency frame of understanding. Secondly, it applies a platform known as state-and-transition modeling to give form to the process. State-and-transition modeling is an iterative investigation into the physical makeup of a system of study as well as the boundaries and influences on that state, and has been used in restorative ecology for more than a decade. Lastly, that model is sited within an adaptive management scheme that provides a structured, cyclical, objective-oriented process for testing stakeholders cognitive understanding of the ecosystem through a pragmatic implementation and monitoring a host of small-scale interventions developed as part of the adaptive management process. Throughout, evidence of the application of the theories and frameworks are offered, with every effort made to retool conservation-minded development practitioners with a comprehensive strategy for addressing the increasingly fragile social-ecological systems of southwest Madagascar. It is offered, in conclusion, that the seascapes of the region would be an excellent case study worthy of future application of state-and-transition modeling and adaptive management as frameworks for conservation-minded development practitioners whose multiple projects, each with its own objective, have been implemented with a single goal in mind: preserve and protect the state of the supporting environment while providing for the basic needs of the local Malagasy people

An integrated evaluation of potential management processes on marine reserves in continental Ecuador based on a Bayesian belief network model

Evaluating potential effects of conservation and management actions in marine reserves requires an understanding not only of the biological processes in the reserve, and between the reserve and the surrounding ocean, but also of the effects of the wildlife on the wider political and economic processes. Such evaluations are made considerably more difficult in the absence of good ecological data from within reserves or consistent data between reserves and the wider marine environment, as is the case in much of mainland Ecuador. We present an approach to evaluate the effects of a wide range of possible management processes on the marine ecology of the Machalilla National Park, as well as that of the surrounding marine environments (including recently established reserves) and related socio-economic pressures. The approach is based on Bayesian belief networks, and as such can be used in the presence of sparse data from multiple and disparate sources. We show that currently there are no observable benefits of marine reserves to reef and fish community structure, and that high value (normally predatory) fish, which are sought by fishers and shark finners are frequently absent from reef systems. We demonstrate that there is broad similarity in ecological communities between most shallow marine systems, in or out of marine reserves, and predict there can be a strong effect from actions outside the reserve on what is present within it. We also show that establishing a stronger link between (responsible) ecotourism and the marine environment could reduce the need for income in other more destructive areas, such as fishing and particularly shark finning, and discuss ways that high value, low impact eco-tourism could be introduced

Cumulative human impacts on coral reefs: assessing risk and management implications for Brazilian coral reefs

Effective management of coral reefs requires strategies tailored to cope with cumulative disturbances from human activities. In Brazil, where coral reefs are a priority for conservation, intensifying threats from local and global stressors are of paramount concern to management agencies. Using a cumulative impact assessment approach, our goal was to inform management actions for coral reefs in Brazil by assessing their exposure to multiple stressors (fishing, land-based activities, coastal development, mining, aquaculture, shipping, and global warming). We calculated an index of the risk to cumulative impacts: (i) assuming uniform sensitivity of coral reefs to stressors; and (ii) using impact weights to reflect varying tolerance levels of coral reefs to each stressor. We also predicted the index in both the presence and absence of global warming. We found that 16% and 37% of coral reefs had high to very high risk of cumulative impacts, without and with information on sensitivity respectively, and 42% of reefs had low risk to cumulative impacts from both local and global stressors. Our outputs are the first comprehensive spatial dataset of cumulative impact on coral reefs in Brazil, and show that areas requiring attention mostly corresponded to those closer to population centres. We demonstrate how the relationships between risks from local and global stressors can be used to derive strategic management actions

Coral distribution and bleaching vulnerability areas in Southwestern Atlantic under ocean warming

Global climate change is a major threat to reefs by increasing the frequency and severity of coral bleaching events over time, reducing coral cover and diversity. Ocean warming may cause shifts in coral communities by increasing temperatures above coral’s upper thermal limits in tropical regions, and by making extratropical regions (marginal reefs) more suitable and potential refugia. We used Bayesian models to project coral occurrence, cover and bleaching probabilities in Southwestern Atlantic and predicted how these probabilities will change under a high-emission scenario (RCP8.5). By overlapping these projections, we categorized areas that combine high probabilities of coral occurrence, cover and bleaching as vulnerability-hotspots. Current coral occurrence and cover probabilities were higher in the tropics (1°S–20°S) but both will decrease and shift to new suitable extratropical reefs (20°S–27°S; tropicalization) with ocean warming. Over 90% of the area present low and mild vulnerability, while the vulnerability-hotspots represent ~ 3% under current and future scenarios, but include the most biodiverse reef complex in South Atlantic (13°S–18°S; Abrolhos Bank). As bleaching probabilities increase with warming, the least vulnerable areas that could act as potential refugia are predicted to reduce by 50%. Predicting potential refugia and highly vulnerable areas can inform conservation actions to face climate change.Postprint2,92

Linking Land and Sea Through an Ecological-Economic Model of Coral Reef Recreation

This is the author accepted manuscript. The final version is available from Elsevier via the DOI in this recordCoastal zones are popular recreational areas that substantially contribute to social welfare. Managers can use information about specific environmental features that people value, and how these might change under different management scenarios, to spatially target actions to areas of high current or potential value. We explored how snorkelers' experience would be affected by separate and combined land and marine management actions in West Maui, Hawaiʻi, using a Bayesian belief network (BBN) and a spatially explicit ecosystem services model. The BBN simulates the attractiveness of a site for recreation by combining snorkeler preferences for coastal features with expert opinions on ecological dynamics, snorkeler behavior, and management actions. A choice experiment with snorkelers elucidated their preferences for sites with better ecological and water-quality conditions. Linking the economic elicitation to the spatially explicit BBN to evaluate land-sea management scenarios provides specific guidance on where and how to act in West Maui to maximize ecosystem service returns. Improving coastal water quality through sediment runoff and cesspool effluent reductions (land management), and enhancing coral reef ecosystem conditions (marine management) positively affected overall snorkeling attractiveness across the study area, but with differential results at specific sites. The highest improvements were attained through joint land-sea management, driven by strong efforts to increase fish abundance and reduce sediment; however, the effects of management at individual beaches varied.Pacific Islands Climate Science Center (PICSC)US Department of Agriculture National Institute of Food and Agriculture (USDA-NIFA)National Oceanic and Atmospheric Administration Coral Reef Conservation ProgramNational Socio-Environmental Synthesis Center (SESYNC

Mid-Term Review Great Barrier Reef Climate Change Action Plan 2007-2012 and delivery program

GHD was commissioned by the Great Barrier Reef Marine Park Authority (GBRMPA) to conduct a midterm review of the Great Barrier Reef Climate Change Action Plan 2007-12 (the Action Plan) and its delivery program. The objectives of the review were to provide a mid-term evaluation (review) of progress made towards achieving the desired outcomes outlined in the Great Barrier Reef Climate Change Action Plan 2007-2012 (impact) management of the delivery program and projects (implementation) ; record and share the lessons learned so far; provide recommendations to guide adaptive management and continuous improvement of the implementation program; contribute to building evaluation awareness and capacity within the Climate Change Group (CCG) and other GBRMPA staff involved in delivering against the Action Plan. This final report describes the review methodology and findings. It provides summary findings in relation to implementation, impact, alignment with action on climate change at other levels, and contribution to the GBRMPA Corporate Plan 2009-2014 in the main body of the report, and detailed results in the form of a series of results charts in an appendix.See the Summary Report at http://hdl.handle.net/11017/958 and the Climate Change Action Plan at http://hdl.handle.net/11017/19

Macroalgal dynamics on Caribbean coral forereefs

MACROALGAL DYNAMICS ON CARIBBEAN CORAL FOREREEFS ABSTRACT Tropical coral reefs are among the most diverse ecosystems of the world but facing increasing threats to their health. Over the last thirty years, many Caribbean coral reefs have undergone dramatic changes and experienced large losses in coral cover, due to direct and indirect anthropogenic disturbances. The results of which are reefs with low rugosity, changed trophic dynamics and low fish diversity. In recent times reefs have failed to recover from disturbances due to an increase in frequency and severity of disturbances and stresses. In the Caribbean on many coral reefs this has resulted in a shift towards macroalgal dominance by species of the phylum Phaeophyta. The processes and factors affecting the standing crop of macroalgae are many and complex. Two main hypotheses are identified in the literature as being the driving forces of algal dynamics: nutrient dynamics (availability, supply and uptake) and herbivory. However, many studies have been found to be inconclusive because of the complexity of the coral reef ecosystem, which makes it difficult if not impossible to control for all factors and processes influencing the standing crop of macroalgae such as light, water flow and sedimentation. The inherent characteristics of macroalgae, like morphology and life history, make them behave differently. Whilst herbivore characteristics, like size of mouth parts, feeding modes and preferences, will influence the amount of algal biomass removed. The spatial context (i.e. coral fore reef vs. back reef) will influence the effects of both bottom-up and top-down controls. Besides these inter-habitat differences, macroalgae within similar habitats but differing geographical locations may respond differently, for example, a forereef exposed to the open ocean or a forereef located in a sheltered bay. This thesis attempts to provide insight into the dynamics of two dominant brown macroalgae on Caribbean coral reefs, Dictyota spp. and Lobophora variegata. This aim was addressed by developing a model for the macroalga species Dictyota to model the various processes and factors on a coral forereef affecting percentage cover. Further, the patch dynamics of both Lobophora variegata and Dictyota were investigated to gain an insight into their dynamics under varying environmental conditions: the windward and leeward sides of an atoll. Finally, herbivory is identified as one of the key process affecting macroalgal cover. I investigated this process by deploying cages on both the windward and leeward side of the atoll to investigate the effects of grazing pressure under varying environmental conditions. A Bayesian Belief Network model was developed for Dictyota spp. to model the bottom-up and top-down processes on a coral forereef determining the percentage cover. The model was quantified using relationships identified in the scientific literature and from field data collected over a nine moth period in Belize. This is the first BBN model developed for brown macroalgae. The fully parameterized model identified areas of limited knowledge and because of its probabilistic nature it can explicitly communicate the uncertainties associated with the processes and interactions on standing crop. As such the model may be used as a framework for scientific research or monitoring programmes and it is expected that the model performance to predict macroalgal percentage cover will improve once new information becomes available. Size-based transition matrices were developed for both Dictyota spp. and Lobophora variegata to investigate the patch dynamics under varying environmental conditions: the windward and leeward sides of an atoll. The matrices reveal that standard measures of algal percent cover might provide a misleading insight into the underlying dynamics of the species. Modelling the patch dynamics with matrices provided insight into the temporal behaviour of macroalgae. This is an important process to understand because patch dynamics are determining competitive interactions with other coral reef benthic organisms. The outcome of competitive interactions will differ with macroalgal species. This study indicate that Dictyota spp. responded strongly to differing environmental conditions in that it has reduced growth rates and lower percent cover on the leeward side of the atoll, whilst Lobophora variegata showed far less sensitivity to environmental conditions. The patch dynamics of Dictyota spp. also showed a higher temporal variation than Lobophora variegata but only on the exposed forereef. A caging experiment was set up to investigate the response of both macroalgal species to different grazing pressure scenarios, under varying environmental conditions. Dictyota spp. had a significant response to environmental conditions in that a higher percentage cover was found on the exposed side of the atoll, whilst for Lobophora variegata the response was far less obvious. The less clear response of Lobophora variegata was very likely caused by competition of Dictyota with Lobophora due to the very high cover Dictyota obtained in the cages where all herbivores were excluded. The low grazing pressure treatments also showed an increase in cover of Dictyota, whilst for Lobophora, only a reduction in the rate of increase could be observed. The results indicate that on the leeward side of the atoll, fish grazing alone seems sufficient to control the standing crop of Dictyota and Lobophora variegata. Retrospective analysis of the experimental design showed that the limited size of the experimental set up could have confounded the results for Lobophora as well. In future experiments it is recommended to increase number replicates. Management of coral reef habitats is frequently constrained by a lack of funds and resources. The BBN Model once fully parameterized can provide a useful tool for coral reef management, because the model allows exploration of different reef scenario’s, which in turn can aid in prioritizing management strategies. Furthermore, the thesis provided an insight into the complexities of macroalgal dynamics. The responses of macroalgae to physiological factors and ecological processes are species specific and dependent on the location, and caution against generalizing on what controls the standing crop of macroalgae. Therefore it is argued that future investigations into algal ecology should clearly define the species, habitat and location. This can help to make informed management decisions.Wildlife Conservation Societ

Increasing trust in new data sources: crowdsourcing image classification for ecology

Crowdsourcing methods facilitate the production of scientific information by non-experts. This form of citizen science (CS) is becoming a key source of complementary data in many fields to inform data-driven decisions and study challenging problems. However, concerns about the validity of these data often constrain their utility. In this paper, we focus on the use of citizen science data in addressing complex challenges in environmental conservation. We consider this issue from three perspectives. First, we present a literature scan of papers that have employed Bayesian models with citizen science in ecology. Second, we compare several popular majority vote algorithms and introduce a Bayesian item response model that estimates and accounts for participants' abilities after adjusting for the difficulty of the images they have classified. The model also enables participants to be clustered into groups based on ability. Third, we apply the model in a case study involving the classification of corals from underwater images from the Great Barrier Reef, Australia. We show that the model achieved superior results in general and, for difficult tasks, a weighted consensus method that uses only groups of experts and experienced participants produced better performance measures. Moreover, we found that participants learn as they have more classification opportunities, which substantially increases their abilities over time. Overall, the paper demonstrates the feasibility of CS for answering complex and challenging ecological questions when these data are appropriately analysed. This serves as motivation for future work to increase the efficacy and trustworthiness of this emerging source of data.Comment: 25 pages, 10 figure