24,770 research outputs found
Stereo Imaging Camera Model for 3D Shape Reconstruction of Complex Crystals and Estimation of Facet Growth Kinetics
The principle that the 3D shape of crystals that grow from a solution can be characterised in real-time using stereo imaging has been demonstrated previously. It uses the 2D images of a crystal that are obtained from two or more cameras arranged in defined angles as well as a mathematical reconstruction algorithm. Here attention is given to the development of a new and more robust 3D shape reconstruction method for complicated crystal structures. The proposed stereo imaging camera model for 3D crystal shape reconstruction firstly rotates a digitised crystal in the three-dimensional space and varies the size dimensions in all face directions. At each size and orientation, 2D projections of the crystal, according to the angles between the 2D cameras, are recorded. The contour information of the 2D images is processed to calculate Fourier descriptors and radius-based signature that are stored in a database. When the stereo imaging instrument mounted on a crystalliser captures 2D images, the images are segmented to obtain the contour information and processed to obtain Fourier descriptors and radius-based information. The calculated Fourier descriptors and radius-based signature are used to find the best matching in the database. The corresponding 3D crystal shape is thus found. Potash alum crystals that each has 26 habit faces were used as a case study. The result shows that the new approach for 3D shape reconstruction is more accurate and significantly robust than previous methods. In addition, the growth rates of {111}, {110} and {100} faces were correlated with relative supersaturation to derive models of facet growth kinetics
Single particle 2D Electron crystallography for membrane protein structure determination
Proteins embedded into or attached to the cellular membrane perform crucial biological functions.
Despite such importance, they remain among the most challenging targets of structural biology.
Dedicated methods for membrane protein structure determination have been devised since decades, however with only partial success if compared to soluble proteins.
One of these methods is 2D electron crystallography, in which the proteins are periodically arranged into a lipid bilayer.
Using transmission electron microscopy to acquire projection images of samples containing such 2D crystals, which are embedded into a thin vitreous ice layer for radiation protection (cryo-EM), computer algorithms can be used to generate a 3D reconstruction of the protein.
Unfortunately, in nearly every case, the 2D crystals are not flat and ordered enough to yield high-resolution reconstructions.
Single particle analysis, on the other hand, is a technique that aligns projections of proteins isolated in solution in order to obtain a 3D reconstruction with a high success rate in terms of high resolution structures.
In this thesis, we couple 2D crystal data processing with single particle analysis algorithms in order to perform a local correction of crystal distortions.
We show that this approach not only allows reconstructions of much higher resolution than expected from the diffraction patterns obtained, but also reveals the existence of conformational heterogeneity within the 2D crystals.
This structural variability can be linked to protein function, providing novel mechanistic insights and an explanation for why 2D crystals do not diffract to high resolution, in general.
We present the computational methods that enable this hybrid approach, as well as other tools that aid several steps of cryo-EM data processing, from storage to postprocessing
2D materials and van der Waals heterostructures
The physics of two-dimensional (2D) materials and heterostructures based on
such crystals has been developing extremely fast. With new 2D materials, truly
2D physics has started to appear (e.g. absence of long-range order, 2D
excitons, commensurate-incommensurate transition, etc). Novel heterostructure
devices are also starting to appear - tunneling transistors, resonant tunneling
diodes, light emitting diodes, etc. Composed from individual 2D crystals, such
devices utilize the properties of those crystals to create functionalities that
are not accessible to us in other heterostructures. We review the properties of
novel 2D crystals and how their properties are used in new heterostructure
devices
Direct Inversion of Digital 3D Fraunhofer Holography Maps
The Differential Fourier Holography (DFH) gives an exact mathematical
solution of the inverse problem of diffraction in the Fraunhofer regime. After
the first publication [1] the Differential Fourier Holography was successfully
applied in many experiments to obtain amplitude and phase information about
two-dimensional (2D) images. In this article we demonstrate numerically the
possibility to apply the DFH also for investigation of unknown 3D Objects. The
first simulation is made for a double-spiral structure plus a line as a
reference object
Revealing three-dimensional structure of individual colloidal crystal grain by coherent x-ray diffractive imaging
We present results of a coherent x-ray diffractive imaging experiment
performed on a single colloidal crystal grain. The full three-dimensional (3D)
reciprocal space map measured by an azimuthal rotational scan contained several
orders of Bragg reflections together with the coherent interference signal
between them. Applying the iterative phase retrieval approach, the 3D structure
of the crystal grain was reconstructed and positions of individual colloidal
particles were resolved. As a result, an exact stacking sequence of hexagonal
close-packed layers including planar and linear defects were identified.Comment: 8 pages, 5 figure
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