Analysis and Development of Instrument Software Paradigms: Conception and Implementation of a New Instrument Control and Data Acquisition System, Proven by Material Scientific Applications

During the last 50 years, the quality of analysis methods in many scientific disciplines has been enhanced by electronic applications, automation and data processing. While the features, performance and usability of these processes have been continually enhanced, it is conspicuous that the majority of institutes operate own proprietary software. This situation arises for both historical and financial reasons, plus a wish to retain autonomy fuelled by the requirement for a system that remains compatible with both new and legacy hardware. This thesis reviews the commonly used scientific software systems and their stakeholders and tries to identify generic problems. The demands on instrument systems are summarized by a requirement specification. Based on these requirements, a basic concept is developed that reflects the current state-of-the art in software design and which may provide a blueprint for instrument system architectures. The results are used to create a proof-of-concept implementation. Core to this approach is an application server that comes with a container, which makes use of the Inversion-of-Control pattern to loosely couple and execute components. These do not need to implement fixed interfaces and are thus decoupled from a specific use-case. Components can, for example, be proxies that control and acquire data from legacy hardware, perform calculations, provide a human-machine interface or act as storage. They are dynamically wired to experiments using XML-based Assembly files. Both Assemblies and Components can be published using a central store on a collaboration platform and shared by the community. This increases reusability and allows the use of existing Assemblies with new hardware by simply replacing the hardware proxy modules. Example components have been provided for the access to legacy and new instrument hardware, the storage of results in the NeXus format, data reduction, simulation with McStas, the execution of customizable scans and the visualization of data

The ATLAS Data Acquisition and High Level Trigger system

This paper describes the data acquisition and high level trigger system of the ATLAS experiment at the Large Hadron Collider at CERN, as deployed during Run 1. Data flow as well as control, configuration and monitoring aspects are addressed. An overview of the functionality of the system and of its performance is presented and design choices are discussed.Facultad de Ciencias Exacta

The ATLAS Data Acquisition and High Level Trigger system

This paper describes the data acquisition and high level trigger system of the ATLAS experiment at the Large Hadron Collider at CERN, as deployed during Run 1. Data flow as well as control, configuration and monitoring aspects are addressed. An overview of the functionality of the system and of its performance is presented and design choices are discussed.Facultad de Ciencias Exacta

Identifying the parametric occurrence of multiple steady states for some biological networks

We consider a problem from biological network analysis of determining regions in a parameter space over which there are multiple steady states for positive real values of variables and parameters. We describe multiple approaches to address the problem using tools from Symbolic Computation. We describe how progress was made to achieve semi-algebraic descriptions of the multistationarity regions of parameter space, and compare symbolic results to numerical methods. The biological networks studied are models of the mitogen-activated protein kinases (MAPK) network which has already consumed considerable effort using special insights into its structure of corresponding models. Our main example is a model with 11 equations in 11 variables and 19 parameters, 3 of which are of interest for symbolic treatment. The model also imposes positivity conditions on all variables and parameters. We apply combinations of symbolic computation methods designed for mixed equality/inequality systems, specifically virtual substitution, lazy real triangularization and cylindrical algebraic decomposition, as well as a simplification technique adapted from Gaussian elimination and graph theory. We are able to determine multistationarity of our main example over a 2-dimensional parameter space. We also study a second MAPK model and a symbolic grid sampling technique which can locate such regions in 3-dimensional parameter space.Comment: 60 pages - author preprint. Accepted in the Journal of Symbolic Computatio

3rd EGEE User Forum

We have organized this book in a sequence of chapters, each chapter associated with an application or technical theme introduced by an overview of the contents, and a summary of the main conclusions coming from the Forum for the chapter topic. The first chapter gathers all the plenary session keynote addresses, and following this there is a sequence of chapters covering the application flavoured sessions. These are followed by chapters with the flavour of Computer Science and Grid Technology. The final chapter covers the important number of practical demonstrations and posters exhibited at the Forum. Much of the work presented has a direct link to specific areas of Science, and so we have created a Science Index, presented below. In addition, at the end of this book, we provide a complete list of the institutes and countries involved in the User Forum

A facility to Search for Hidden Particles (SHiP) at the CERN SPS

A new general purpose fixed target facility is proposed at the CERN SPS accelerator which is aimed at exploring the domain of hidden particles and make measurements with tau neutrinos. Hidden particles are predicted by a large number of models beyond the Standard Model. The high intensity of the SPS 400~GeV beam allows probing a wide variety of models containing light long-lived exotic particles with masses below ${\cal O}$(10)~GeV/c$^2$, including very weakly interacting low-energy SUSY states. The experimental programme of the proposed facility is capable of being extended in the future, e.g. to include direct searches for Dark Matter and Lepton Flavour Violation.Comment: Technical Proposa