Text and spatial data mining

Parcellation of the human brain Parcellation of the human brain by combining text mining and spatial data mining within a neuroinformatics database. Text mining: Analysis of scientific abstracts. Spatial data mining: Modeling of the distribution of Talairach coordinates. Seek communality between the the text representation and spatial representation by multivariate analysis

Semi-Supervised Kernel PCA

We present three generalisations of Kernel Principal Components Analysis (KPCA) which incorporate knowledge of the class labels of a subset of the data points. The first, MV-KPCA, penalises within class variances similar to Fisher discriminant analysis. The second, LSKPCA is a hybrid of least squares regression and kernel PCA. The final LR-KPCA is an iteratively reweighted version of the previous which achieves a sigmoid loss function on the labeled points. We provide a theoretical risk bound as well as illustrative experiments on real and toy data sets

Databasing Molecular Neuroimaging

Molecular neuroimaging Most molecular imaging studies relies on analysis of values from brain regions and report descriptive statistics for these values. There are two significant difficulties when comparing molecular neuroimaging studies: 1. Regions differ between studies: E.g., some include values for “temporal cortex ” others do not. 2. Measured and reported values differ between studies and they are not comparable: Tracers and receptors; transport rates (e.g., K1), distribution volume, binding potentials; different methods to compute the values

Neuroinformatics in Functional Neuroimaging

This Ph.D. thesis proposes methods for information retrieval in functional neuroimaging through automatic computerized authority identification, and searching and cleaning in a neuroscience database. Authorities are found through cocitation analysis of the citation pattern among scientific articles. Based on data from a single scientific journal it is shown that multivariate analyses are able to determine group structure that is interpretable as particular “known ” subgroups in functional neuroimaging. Methods for text analysis are suggested that use a combination of content and links, in the form of the terms in scientific documents and scientific citations, respectively. These included context sensitive author ranking and automatic labeling of axes and groups in connection with multivariate analyses of link data. Talairach foci from the BrainMap ™ database are modeled with conditional probability density models useful for exploratory functional volumes modeling. A further application is shown with conditional outlier detection where abnormal entries in the BrainMap ™ database are spotted using kernel density modeling and the redundancy between anatomical labels and spatial Talairach coordinates. This represents a combination of simple term and spatial modeling. The specific outliers that were found in the BrainMap ™ database constituted among others: Entry errors, errors in the article and unusual terminology

Conceptual Knowledge Representation and Reasoning

One of the main areas in knowledge representation and logic-based artificial intelligence concerns logical formalisms that can be used for representing and reasoning with concepts. For almost 30 years, since research in this area began, the issue of intensionality has had a special status in that it has been considered to play an important role, yet it has not been precisely established what it means for a logical formalism to be intensional. This thesis attempts to set matters straight. Based on studies of the main contributions to the issue of intensionality from philosophy of language, in particular the works of Gottlob Frege and Rudolf Carnap, we start by defining when a logical formalism is intensional. We then examine whether the current formalizations of concepts are intensional. The result is negative in the sense that none of the prevalent formalizations are intensional. This motivates the development of intensional logics for concepts. Our main contribution is the presentation of such an intensional concept logic

Internet Safety and Security Surveys - A Review

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Conceptual modelling: Towards detecting modelling errors in engineering applications

Rapid advancements of modern technologies put high demands on mathematical modelling of engineering systems. Typically, systems are no longer “simple” objects, but rather coupled systems involving multiphysics phenomena, the modelling of which involves coupling of models that describe different phenomena. After constructing a mathematical model, it is essential to analyse the correctness of the coupled models and to detect modelling errors compromising the final modelling result. Broadly, there are two classes of modelling errors: (a) errors related to abstract modelling, eg, conceptual errors concerning the coherence of a model as a whole and (b) errors related to concrete modelling or instance modelling, eg, questions of approximation quality and implementation. Instance modelling errors, on the one hand, are relatively well understood. Abstract modelling errors, on the other, are not appropriately addressed by modern modelling methodologies. The aim of this paper is to initiate a discussion on abstract approaches and their usability for mathematical modelling of engineering systems with the goal of making it possible to catch conceptual modelling errors early and automatically by computer assistant tools. To that end, we argue that it is necessary to identify and employ suitable mathematical abstractions to capture an accurate conceptual description of the process of modelling engineering systems