Distribution of SLAF tags and SNPs on chromosomes of 419 rice landraces.

<p>(a) SLAF tags on chromosomes; (b) SNPs on chromosomes.</p

Phylogenetic tree and PCA analysis for 419 rice landraces.

<p>(a) Clustering of 419 rice landraces; (b) PCA analysis of 419 rice landraces.</p

Population structure of all 419 rice landraces.

<p>Population structure of all 419 rice landraces.</p

Genome-wide association studies for gelatinization temperature based on MLM model.

<p>(a-c) Manhattan plots and quantile-quantile plots for the whole panel and the two subpanels in 2014; (d-f) Manhattan plots and quantile-quantile plots for the whole panel and the two subpanels in 2015.</p

Genome-wide association studies for pericarp color based on MLM model.

<p>(a-c) Manhattan plots and quantile-quantile plots for the whole panel and the two subpanels.</p

A sbuset of associated loci and candidate genes.

<p>A sbuset of associated loci and candidate genes.</p