Numbers of methylation reads in SNPv rich region.

<p>Numbers of methylation reads in SNPv rich region.</p

GO analysis of genes containing chip-SNP, SS-SNPv and ST-SNPv.

<p>GO analysis of genes containing chip-SNP, SS-SNPv and ST-SNPv.</p

The possible relation of ROS, DNA methylation, SNPv and SNPr.

<p>The possible relation of ROS, DNA methylation, SNPv and SNPr.</p

Statistics of SNPv numbers of different types.

<p>Statistics of SNPv numbers of different types.</p

Salt tolerance index and numbers of SNPv in different varieties.

<p>Salt tolerance index and numbers of SNPv in different varieties.</p

Distribution on the chromosomes of SNPv of eight varieties and chip SNP.

<p>1~4: the salt sensitive varieties: Hengmian3, GK50, Xinyan96-48, ZhongS9612; 5~8: the salt tolerant varieties: CRI35, Zhong9807, CRI 44, Kanghuangwei164; 9: Illumina Cotton SNP 70K Chip.</p

Additional file 5 of Genome-wide identification and function analysis of HMAD gene family in cotton (Gossypium spp.)

Additional file 5 : Table S2. Analysis of high-expression gene with cis-elements

Mining and Analysis of SNP in Response to Salinity Stress in Upland Cotton (<i>Gossypium hirsutum</i> L.) - Fig 5

<p>Locations (a) and distribution (b) of SNPr in different chromosomes. The boxes in Fig 5A are the rich region of SNPr.</p

Additional file 7 of Genome-wide identification and function analysis of HMAD gene family in cotton (Gossypium spp.)

Additional file 7 : Table S4. Primers of qRT-PCR used in this study

GO analysis of genes neighboring SNPr rich regions.

<p>GO analysis of genes neighboring SNPr rich regions.</p