Additional file 2: of Comparative analysis of Cd-responsive maize and rice transcriptomes highlights Cd co-modulated orthologs

Table S2. Primers used for quantitative RT-PCR and cloning maize GADs. (XLSX 10 kb

Additional file 6: of Comparative analysis of Cd-responsive maize and rice transcriptomes highlights Cd co-modulated orthologs

Table S6. Eight hundred eighty plant orthologous groups composed of Cd-responsive orthologs in maize and rice. (XLSX 78 kb

Additional file 5: of Comparative analysis of Cd-responsive maize and rice transcriptomes highlights Cd co-modulated orthologs

Table S5. Cd-responsive 2567 DEGs in rice roots post Cd treatment. (XLSX 268 kb

Additional file 7: of Comparative analysis of Cd-responsive maize and rice transcriptomes highlights Cd co-modulated orthologs

Figure S1. Global view of Cd-responsive maize orthologs with rice counterparts in metabolic pathways. For the 1074 maize DEGs with rice orthologs, 471 data points were visible on the metabolic pathways (Arabidopsis seed-Molecular Networks) using MapMan software. The colored boxes indicate the Log2 ratio of Cd1h/ck1h. (PDF 1258 kb

Additional file 4: of Comparative analysis of Cd-responsive maize and rice transcriptomes highlights Cd co-modulated orthologs

Table S4. Quantitative RT-PCR of 10 random selected DEGs expression in maize roots exposed to Cd. (XLSX 10 kb

Additional file 7: Table S8. of Comparative transcriptome profiling of the fertile and sterile flower buds of a dominant genic male sterile line in sesame (Sesamum indicum L.)

The predicted effects of InDels in DEGs. The sequence variations (i.e. InDels) were first detected between sterile and fertile alleles and their potential effects (i.e. causing loss of gene function or codon change) were then predicted by the software SnpEff. (XLSX 15 kb

Additional file 3: of Comparative analysis of Cd-responsive maize and rice transcriptomes highlights Cd co-modulated orthologs

Table S3. Cd-responsive 5166 DEGs in maize roots post Cd treatment. (XLSX 513 kb

Additional file 4: Figure S1. of Co-expression network analysis of the transcriptomes of rice roots exposed to various cadmium stresses reveals universal cadmium-responsive genes

Quantitative RT-PCR of 8 randomly selected DEGs expression in in rice roots exposed to Cd for 1 h. Actin-1 (LOC4333919) was used to standardize transcript levels in each sample. The primers used in the qRT-PCR experiments are listed in additional Table S3. (PPT 75 kb

Additional file 7: Table S8. of Comparative transcriptome profiling of the fertile and sterile flower buds of a dominant genic male sterile line in sesame (Sesamum indicum L.)

The predicted effects of InDels in DEGs. The sequence variations (i.e. InDels) were first detected between sterile and fertile alleles and their potential effects (i.e. causing loss of gene function or codon change) were then predicted by the software SnpEff. (XLSX 15 kb

Additional file 4 of Integrative analyses of targeted metabolome and transcriptome of Isatidis Radix autotetraploids highlighted key polyploidization-responsive regulators

Additional file 4: Table S4. Polyploidy-responsive genes in Isatidis Radix