37 research outputs found

    Alignment of coded cpDNA sequences of the Doronicum clusii aggregate (Asteraceae)

    No full text
    Alignment (in fasta format) of three concatenated cpDNA regions, coded for TCS analysis, of the Doronicum clusii aggregate (Asteraceae). The three regions are: ndhF-rpl32 intergenic spacer (positions 1-1057); rpl32-trnL(UAG) intergenic spacer (positions 1058-1914); 3'rps16-5'trnK(UUU) intergenic spacer (positions 1915-2776). Sample names have the following format: Taxon name_population number_individual number

    Alignment of original cpDNA sequences of the Doronicum clusii aggregate (Asteraceae)

    No full text
    Alignment (in fasta format) of three concatenated cpDNA regions of the Doronicum clusii aggregate (Asteraceae). The three regions are: ndhF-rpl32 intergenic spacer (positions 1-1099); rpl32-trnL(UAG) intergenic spacer (positions 1100-1959); 3'rps16-5'trnK(UUU) intergenic spacer (positions 1960-2883). Sample names have the following format: Taxon name_population number_individual number

    Doronicum_clusii_aggregate_ITS_alignment

    No full text
    Alignment (in fasta format) of nuclear ITS sequences of the Doronicum clusii aggregate (Asteraceae). Sample names have the following format: Taxon name_population number_individual number_clone number (clone numbers only for some individuals)

    AFLP matrix for Doronicum clusii aggregate (Asteraceae)

    No full text
    AFLP data matrix (as comma separated file) of the Doronicum clusii aggregate (Asteraceae). Sample names have the following format: Taxon name_population number_individual number

    Sequence statistics of studied DNA regions.

    No full text
    <p><sup>a</sup> with / without outgroup sequences.</p><p>Sequence statistics of studied DNA regions.</p

    Populations of the <i>Doronicum</i> taxa investigated, sampling locations (voucher information), relative fluorescence, number of investigated individuals, AFLP-derived gene diversity and rarity, Prabclus assignments, plastid haplotype, and GenBank accession numbers.

    No full text
    <p><sup>a</sup> countries: A, Austria; BIH, Bosnia and Herzegovina; CH, Switzerland; I, Italy; RO, Romania; SK, Slovakia; collectors: PEG, P. Escobar Garc√≠a; AH, RF, R. Flatscher; BF, B. Frajman; CG, C. Gilli, MG, M. Gina; HPG, H. P. Grohmann; AH, A. Hahnekamp; CP, C. Pachschw√∂ll; JP, J. Pachschw√∂ll; GMS, G. M. Schneeweiss, PS, P. Sch√∂nswetter; MS, M. Sonnleitner.</p><p><sup>b</sup> Estimated with flow cytometry for a pooled sample of 3‚Äď6 individuals and given as ratio of DAPI-stained nuclei compared to the internal standards <i>Pisum sativum</i> (not indicated) or <i>Vicia faba</i> (marked with an asterisk).</p><p><sup>c</sup> Number of individuals used for DAPI flow cytometry and AFLP genotyping, respectively.</p><p><sup>d</sup> Plastid DNA haplotypes derived from <i>ndh</i>F-<i>rpl</i>32, <i>rpl</i>32-<i>trn</i>L<sub>UAG</sub> and 3‚Ä≤<i>rps</i>16‚Äď5‚Ä≤<i>trn</i>K<sub>UUU</sub>-sequences.</p><p><sup>e</sup> Assignment to the four Prabclus groups. calc: <i>D. glaciale</i> subsp. <i>calcareum</i>, glac: <i>D. glaciale</i> subsp. <i>glaciale</i>, clus: <i>D. clusii</i> s.s., stir: <i>D. stiriacum</i>: number of individuals (proportion of correct assignment to the original cluster, i.e. bootstrap support of correct assignment; proportion of assignment to additional clusters within the same species, i.e., oversplitting; proportion of no assignment).</p><p><sup>f</sup><i>ndh</i>F-<i>rpl</i>32; <i>rpl</i>32-<i>trn</i>L<sub>UAG</sub>; 3‚Ä≤<i>rps</i>16‚Äď5‚Ä≤<i>trn</i>K<sub>UUU</sub>; ITS uncloned / ITS cloned.</p><p>Populations of the <i>Doronicum</i> taxa investigated, sampling locations (voucher information), relative fluorescence, number of investigated individuals, AFLP-derived gene diversity and rarity, Prabclus assignments, plastid haplotype, and GenBank accession numbers.</p

    Mitotic chromosomes of members of the <i>Doronicum clusii</i> aggregate.

    No full text
    <p>(a) <i>D. clusii</i> s.s. from Mt. Plose, Dolomiten, Italy (pop. 42; CP1042), 2<i>n</i> = 60; (b) <i>D. stiriacum</i> from Mt. H√∂chstein, Schladminger Tauern, Austria (pop. 34; CP1041), 2<i>n</i> = c. 120; (c) <i>D. glaciale</i> subsp. <i>glaciale</i> from Mt. Gruft, Gurktaler Alpen, Austria (pop. 15; CP1038), 2<i>n</i> = 60. Scale bars = 5 őľm.</p

    Overview of the taxa of the <i>Doronicum clusii</i> aggregate and their diagnostic morphological characters (summarized from [50,58,59,113,114,116]).

    No full text
    <p>Overview of the taxa of the <i>Doronicum clusii</i> aggregate and their diagnostic morphological characters (summarized from [<a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0118197#pone.0118197.ref050" target="_blank">50</a>,<a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0118197#pone.0118197.ref058" target="_blank">58</a>,<a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0118197#pone.0118197.ref059" target="_blank">59</a>,<a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0118197#pone.0118197.ref113" target="_blank">113</a>,<a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0118197#pone.0118197.ref114" target="_blank">114</a>,<a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0118197#pone.0118197.ref116" target="_blank">116</a>]).</p

    Phylogenetic relationships of the <i>Doronicum clusii</i> aggregate based on nuclear DNA sequences.

    No full text
    <p>Maximum likelihood tree based on nuclear ITS data; numbers above branches are bootstrap support values above 50%. The coloured bar to the right represents morphologically defined taxa as in <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0118197#pone.0118197.g001" target="_blank">Fig. 1</a>.</p
    corecore