Additional file 1: of Identification of recombination events in outbred species with next-generation sequencing data

Table S1. Summary of parental blocks from the intermediate files of ‘parent1.abxaa.5snps.blocks’, ‘parent2.aaxab.5snps.blocks’, ‘parent1.long.haplotype’ and ‘parent2.long.haplotype’, created by findGCO. Table S2. The number of SNPs contained in the long parental haplotypes from the intermediate files of ‘parent1.long. Haplotype’ and ‘parent2.long.haplotype’ created by findGCO. Table S3. Distribution of the number of gene conversion events detected in each of the 10 progeny and inherited from the male parent based on the reference genome sequences. Figure S1. CO patterns identified in each progeny on all chromosomes in the female parent P. deltoides. Figure S2. CO patterns identified in each progeny on all chromosomes in the male parent P. simonii. (DOCX 277 kb

Additional file 5: of Identification of recombination events in outbred species with next-generation sequencing data

Excel Sheets CS-B35–2, CS-C25–3, CS-C3–2, CS-C32–2, CS-C5–3, CS-3-12, CS-3-14, CS-3-15, CS-3-16 and CS-3-18 Crossover tracts on each chromosome of the maternal P. simonii that were identified in each progeny. Excel Sheet S7 Summary of the crossover numbers on the male chromosomes that were identified in each progeny. Excel Sheet S8 Summary of the crossover events on the male chromosomes that were identified within a short haplotype block region. (XLSX 58 kb

Additional file 4: of Identification of recombination events in outbred species with next-generation sequencing data

Excel Sheets CD-B35–2, CD-C25–3, CD-C3–2, CD-C32–2, CD-C5–3, CD-3-12, CD-3-14, CD-3-15, CD-3-16 and CD-3-18 Crossover tracts on each chromosome of the maternal P. deltoides that were identified in each progeny. Excel Sheet S5 Summary of the crossover numbers on the female chromosomes that were identified in each progeny. Excel Sheet S6 Summary of the crossover events on the female chromosomes that were identified within a short haplotype block region. (XLSX 72 kb

Additional file 2: of Identification of recombination events in outbred species with next-generation sequencing data

Excel Sheets RD-B35–2, RD-C25–3, RD-C3–2, RD-C32–2, RD-C5–3, RD-3-12, RD-3-14, RD-3-15, RD-3-16 and RD-3-18 Distribution of the number of recombination events over fragment length, which occurred in the meiosis of the female P. deltoides and were identified in each of the 10 progeny. Excel Sheet S1 Distribution of the average number of recombination events over fragment length, which occurred in the meiosis of the female P. deltoides and were identified in the 10 progeny. Excel Sheet S2 Summary of the number and the total length of haplotype blocks in which the maternal recombination events were identified in each progeny. (XLSX 29 kb

Additional file 3: of Identification of recombination events in outbred species with next-generation sequencing data

Excel Sheets RS-B35–2, RS-C25–3, RS-C3–2, RS-C32–2, RS-C5–3, RS-3-12, RS-3-14, RS-3-15, RS-3-16 and RS-3-18 Distribution of the number of recombination events over fragment length, which occurred in the meiosis of the male P. simonii and were identified in each of the 10 progeny. Excel Sheet S3 Distribution of the average number of recombination events over fragment length, which occurred in the meiosis of the male P. simonii and were identified in the 10 progeny. Excel Sheet S4 Summary of the number and the total length of haplotype blocks in which the paternal recombination events were identified in each progeny. (XLSX 29 kb

Additional file 4: Figure S1. of MVQTLCIM: composite interval mapping of multivariate traits in a hybrid F1 population of outbred species

Biological process GO category for the genes within the region of QTL Q1D1. Figure S2. Biological process GO category for the genes within the region of QTL Q2D1. Figure S3. Biological process GO category for the genes within the region of QTL Q3D1. Figure S4. Biological process GO category for the genes within the region of QTL Q1D2. Figure S5. Biological process GO category for the genes within the region of QTL Q2D2. Figure S6. Biological process GO category for the genes within the region of QTL Q3D2. Figure S7. Biological process GO category for the genes within the region of QTL QD5. Figure S8. Biological process GO category for the genes within the region of QTL QD9. Figure S9. Biological process GO category for the genes within the region of QTL Q1D14. Figure S10. Biological process GO category for the genes within the region of QTL Q2D14. Figure S11. Biological process GO category for the genes within the region of QTL QS7. Figure S12. Biological process GO category for the genes within the region of QTL QS9. (DOCX 642 kb