The overall flowchart of 3DMKDSRC.

<p>The overall flowchart of 3DMKDSRC.</p

Network interaction for lung cancer pathways.

<p>Red edge indicates that the interaction between connected pathways are amplified in disease individuals. Blue edge indicates the interaction suppressed in disease individuals.</p

Shapes of two face scans in the scale space.

<p>Shapes of two face scans in the scale space.</p

Additional file 2 of Metabolomic and Transcriptomic Changes Induced by Potassium Deficiency During Sarocladium oryzae Infection Reveal Insights into Rice Sheath Rot Disease Resistance

Additional file 2. Metabolites data

Additional file 1 of Metabolomic and Transcriptomic Changes Induced by Potassium Deficiency During Sarocladium oryzae Infection Reveal Insights into Rice Sheath Rot Disease Resistance

Additional file 1: Fig. S1 GO function classification of DEGs. Fig. S2. Trypan blue staining of FLSs. Fig. S3 K deficiency alters the elemental contents of FLS during S. oryzae infection. Fig. S4 K concentrations of healthy and diseased plants among different organs. Table S1 Mapping statistics of K-starved rice and K-sufficient rice at 0 and 5 days post inoculation. Table S2 Expression profile of lipid metabolism related genes in the FLS. Table S3 Lipid species related to phospholipids metabolism based on the top 10 VIP scores. Table S4 Morphological parameters of chloroplasts. Table S5 Photosynthetic characteristics of flag leaf

Gene sets associated with the two-dimensional clinical outcome based on MeDiA.

<p>^* Superscripts by the GO terms are for easy reference from the main text.</p><p>Gene sets associated with the two-dimensional clinical outcome based on MeDiA.</p

Presentation_1_Potassium Deficiency in Rice Aggravates Sarocladium oryzae Infection and Ultimately Leads to Alterations in Endophyte Communities and Suppression of Nutrient Uptake.pdf

Sheath rot disease is an emerging fungal disease in rice, whose infection causes severe yield loss. Sarocladium oryzae (S. oryzae) is the major causal agent. Previous study has demonstrated that rice deficiency in potassium (K) aggravates S. oryzae infection. However, the effects of S. oryzae infection on the nutrient-uptake process, endophyte communities, and hormone level of host plant under K-deficiency condition remain unclear, the mechanism of K mediated S. oryzae infection needs to be further study. The present study analyzed alterations in the endophytic community and nutrient-uptake process of host plants through an exogenous inoculation of S. oryzae in pot and hydroponics experiments. S. oryzae infection sharply increased the relative abundance of Ascomycota and decreased the Shannon and Simpson index of the endophytic community. Compared with the K-sufficient rice infected with S. oryzae, K-starved rice infected with S. oryzae (−K + I) increased the relative abundance of Ascomycota in leaf sheaths by 52.3%. Likewise, the −K + I treatment significantly decreased the Shannon and Simpson indexes by 27.7 and 25.0%, respectively. Sufficient K supply increased the relative abundance of Pseudomonas spp. in the host plant. S. oryzae infection profoundly inhibited the nutrient uptake of the host plant. The accumulation of oleic acid and linoleic acid in diseased rice decreased the biosynthesis of jasmonic acid (JA), and the content of JA was lowest in the −K + I treatment, which suppressed K+ uptake. These results emphasize the importance of K in resistance to S. oryzae infection by modulating endophyte community diversity and enhancing the nutrient-uptake capacity of the host plant.</p

Summary of methods on Probabilistic association discovery discussed in this paper.

<p>Summary of methods on Probabilistic association discovery discussed in this paper.</p

An example of a coefficient vector which is not sparse.

<p>An example of a coefficient vector which is not sparse.</p

Random samples generated from independent bivariate normal distribution (left), and mixture bivariate normal distribution with ±0.8 covariates (right).

<p>The dashed lines connects two observations if they are nearest neighbors.</p