Additional file 3: Table S3. of In vivo functional analysis of L-rhamnose metabolic pathway in Aspergillus niger: a tool to identify the potential inducer of RhaR

Primers used in this study to generate the gene fragments for qRT-PCR analysis. (PDF 252 kb

MOESM7 of Boosting LPMO-driven lignocellulose degradation by polyphenol oxidase-activated lignin building blocks

Additional file 7: Table S2. Selected cellulase-rich Ascomycota from the JGI database1

MOESM1 of Boosting LPMO-driven lignocellulose degradation by polyphenol oxidase-activated lignin building blocks

Additional file 1: Figure S1. Activity of MtLPMO9B towards amorphous cellulose in the presence and absence of MtPPO7 or AbPPO. HPAEC elution pattern of regenerated amorphous cellulose (RAC; 1.5 mg mL−1) incubated with MtLPMO9B (red, 5.0 μg mL−1) only, or with either AbPPO (blue, 2.5 µL mL−1) or MtPPO7 (yellow, 5.0 μg mL−1) in the presence of (a) para-coumaric acid (no. 3 specified in Table 1, 2 mM) and (b) 3-hydroxy-4-methoxycinnamic acid (no. 5 specified in Table 1, 2 mM). The incubation of RAC with MtLPMO9B results in the formation of non-oxidized gluco-oligosaccharides (GlcOSn) and C1-oxidized gluco-oligosaccharides (GlcOS n # ). See “Methods” for details

MOESM7 of Boosting LPMO-driven lignocellulose degradation by polyphenol oxidase-activated lignin building blocks

Additional file 7: Table S2. Selected cellulase-rich Ascomycota from the JGI database1

MOESM2 of Boosting LPMO-driven lignocellulose degradation by polyphenol oxidase-activated lignin building blocks

Additional file 2: Figure S2. Release of oligosaccharides from RAC incubated with MtLPMO9B in the presence and absence of MtPPO7 throughout 24 h. Samples were incubated in the presence of ferulic acid (no. 8 specified in Table 1). The total sum is shown as integrated peak areas of released non-oxidized (shaded red and shaded yellow) and C1-oxidized (red and yellow) gluco-oligosaccharides after incubation of regenerated amorphous cellulose (RAC; 1.5 mg mL−1) with MtLPMO9B only (red bars, 5 mg mL−1) and MtLPMO9B together with MtPPO7 (yellow bars, 5 mg mL−1) based on HPAEC. All incubations were performed in duplicate, and the standard deviations are presented as error bars. See “Methods” for details

Additional file 7: of Blocking hexose entry into glycolysis activates alternative metabolic conversion of these sugars and upregulates pentose metabolism in Aspergillus nidulans

Table S3. Functional classification of A. nidulans genes belonging to the C-compound and carbohydrate metabolism subclass according to FunCat. (XLSX 60 kb

Additional file 1: of Blocking hexose entry into glycolysis activates alternative metabolic conversion of these sugars and upregulates pentose metabolism in Aspergillus nidulans

Figure S5. Principal component analysis (PDF 165 kb

Additional file 8: of Blocking hexose entry into glycolysis activates alternative metabolic conversion of these sugars and upregulates pentose metabolism in Aspergillus nidulans

Table S4. Expression of selected CAZymes involved in the degradation of plant biomass in Aspergillus nidulans. (XLSX 63 kb

Additional file 2: of Blocking hexose entry into glycolysis activates alternative metabolic conversion of these sugars and upregulates pentose metabolism in Aspergillus nidulans

Table S5. Expression of known gene involved in central carbon metabolism in Aspergillus nidulans. (XLSX 32 kb

Additional file 10: of Blocking hexose entry into glycolysis activates alternative metabolic conversion of these sugars and upregulates pentose metabolism in Aspergillus nidulans

Table S6. Primers used in this study to generate the gene fragments for qRT-PCR analysis. (XLSX 10 kb