26 research outputs found
Kinetics of Oriented Attachment of Mica Crystals
Oriented attachment (OA), that is, the coalescence of
crystals
through attachment on coaligned crystal faces, is a nonclassical crystal
growth process. Before attachment, a mesocrystal consisting of coaligned
parallel crystals but with liquid separating them was observed. Fundamental
questions such as why OA is kinetically favored and whether a mesocrystal
stage is a prerequisite for OA are raised. Through combining brute-force
molecular dynamics simulations and path samplings based on extensive
umbrella simulations, we address these questions with a case study
on the OA of a mica nanocrystal onto a mica crystal substrate in water.
Brute-force simulations show that if two mica crystals are attached
but largely misaligned, coalignment hardly appears. Thus, if OA is
possible, then coalignment must appear before the attachment between
crystals. Electrophoresis of the nanocrystal toward the substrate
surface is spontaneous, but mesocrystal formation is occasional,
also shown by brute-force simulations. Free energies along different
pathways show that OA is spontaneous and kinetically favored over
non-OA, and a mesocrystal formation is just a bifurcation in the pathway.
OA is through a pathway in which the nanocrystal is tilted with respect
to the substrate. Part of the nanocrystal is attached to the substrate
first, and then, OA is gradually completed. Once a mesocrystal is
occasionally formed, then a jump event is needed for the nanocrystal
to get back to the OA pathway. The sampling technique here can hopefully
guide the design of nanostructured materials facilitated by OA
Closest-Packing Water Monolayer Stably Intercalated in Phyllosilicate Minerals under High Pressure
The
directional hydrogen-bond (HB) network and nondirectional van der
Waals (vdW) interactions make up the specificity of water. Directional
HBs could construct an ice-like monolayer in hydrophobic confinement
even in the ambient regime. Here, we report a water monolayer dominated
by vdW interactions confined in a phyllosilicate interlayer under
high pressure. Surprisingly, it was in a thermodynamically stable
state coupled with bulk water at the same pressure (P) and temperature (T), as revealed by the thermodynamic
integration approach on the basis of molecular dynamics (MD) simulations.
Both classical and ab initio MD simulations showed water O atoms were
stably trapped and exhibited an ordered hexagonal closest-packing
arrangement, but OH bonds of water reoriented frequently and exhibited
a specific two-stage reorientation relaxation. Strikingly, hydration
in the interlayer under high pressure had no relevance with surface
hydrophilicity rationalized by the HB forming ability, which, however,
determines wetting in the ambient regime. Intercalated water molecules
were trapped by vdW interactions, which shaped the closest-packing
arrangement and made hydration energetically available. The high pressure–volume
term largely drives hydration, as it compensates the entropy penalty
which is restricted by a relatively lower temperature. This vdW water
monolayer should be ubiquitous in the high pressure but low-temperature
regime
Closest-Packing Water Monolayer Stably Intercalated in Phyllosilicate Minerals under High Pressure
The
directional hydrogen-bond (HB) network and nondirectional van der
Waals (vdW) interactions make up the specificity of water. Directional
HBs could construct an ice-like monolayer in hydrophobic confinement
even in the ambient regime. Here, we report a water monolayer dominated
by vdW interactions confined in a phyllosilicate interlayer under
high pressure. Surprisingly, it was in a thermodynamically stable
state coupled with bulk water at the same pressure (P) and temperature (T), as revealed by the thermodynamic
integration approach on the basis of molecular dynamics (MD) simulations.
Both classical and ab initio MD simulations showed water O atoms were
stably trapped and exhibited an ordered hexagonal closest-packing
arrangement, but OH bonds of water reoriented frequently and exhibited
a specific two-stage reorientation relaxation. Strikingly, hydration
in the interlayer under high pressure had no relevance with surface
hydrophilicity rationalized by the HB forming ability, which, however,
determines wetting in the ambient regime. Intercalated water molecules
were trapped by vdW interactions, which shaped the closest-packing
arrangement and made hydration energetically available. The high pressure–volume
term largely drives hydration, as it compensates the entropy penalty
which is restricted by a relatively lower temperature. This vdW water
monolayer should be ubiquitous in the high pressure but low-temperature
regime
Closest-Packing Water Monolayer Stably Intercalated in Phyllosilicate Minerals under High Pressure
The
directional hydrogen-bond (HB) network and nondirectional van der
Waals (vdW) interactions make up the specificity of water. Directional
HBs could construct an ice-like monolayer in hydrophobic confinement
even in the ambient regime. Here, we report a water monolayer dominated
by vdW interactions confined in a phyllosilicate interlayer under
high pressure. Surprisingly, it was in a thermodynamically stable
state coupled with bulk water at the same pressure (P) and temperature (T), as revealed by the thermodynamic
integration approach on the basis of molecular dynamics (MD) simulations.
Both classical and ab initio MD simulations showed water O atoms were
stably trapped and exhibited an ordered hexagonal closest-packing
arrangement, but OH bonds of water reoriented frequently and exhibited
a specific two-stage reorientation relaxation. Strikingly, hydration
in the interlayer under high pressure had no relevance with surface
hydrophilicity rationalized by the HB forming ability, which, however,
determines wetting in the ambient regime. Intercalated water molecules
were trapped by vdW interactions, which shaped the closest-packing
arrangement and made hydration energetically available. The high pressure–volume
term largely drives hydration, as it compensates the entropy penalty
which is restricted by a relatively lower temperature. This vdW water
monolayer should be ubiquitous in the high pressure but low-temperature
regime
Two new monoterpenoid indole alkaloids from <i>Tabernaemontana divaricata</i>
Two new monoterpenoid indole alkaloids, tabervarines A (1) and B (2), along with seven known monoterpenoid indole alkaloids, were isolated from the methanol extract of the twigs and leaves of Tabernaemontana divaricata. The structures including the absolute configurations of the new alkaloids were elucidated based on MS, NMR, and ECD calculation. The in vitro cytotoxic activities of the isolated alkaloids against several human cancer cell lines were also evaluated.</p
Influences of Cation Ratio, Anion Type, and Water Content on Polytypism of Layered Double Hydroxides
Layered
double hydroxides (LDHs) are a significant sink of anions (CO<sub>3</sub><sup>2–</sup>, SO<sub>4</sub><sup>2–</sup>,
NO<sub>3</sub><sup>–</sup>, Cl<sup>–</sup>, etc.) and
divalent transition-metal cations in soil. The anion exchange capacity
gives rise to functional materials. The stability of LDHs is determined
by the interaction between cation-bearing layers and intercalated
water and anions, which is correlated with polytypism and coordination
structure. A systematic investigation is performed to show the influence
of cation ratio, anion type, and water content on polytypism, swelling
behavior, and interlayer structure of Mg–Al-LDHs using molecular
dynamics simulations. LDHs intercalated with NO<sub>3</sub><sup>–</sup> ions exhibit a polytype transition from 3<i>R</i><sub>1</sub> (three-layer rhombohedral polytype) to 1<i>T</i> (one-layer trigonal polytype) with increasing water content. NO<sub>3</sub><sup>–</sup> ions exhibit a <i>D</i><sub>3<i>h</i></sub> point group symmetry at low water contents.
The polytype transition coincides with the complete transformation
into tilted NO<sub>3</sub><sup>–</sup> ion with a <i>C</i><sub>2<i>v</i></sub> point group symmetry. The transition
appears at a lower water content when the Mg/Al ratio is lower. LDHs
with SO<sub>4</sub><sup>2–</sup> ions exhibit a three-stage
polytypism. The first and last stages are 3<i>R</i><sub>1</sub>. The intermediate stage could be 1<i>T</i> or a
mixture of different <i>O</i>(octahedra)-type interlayers,
which depends on the cation ratio. The relative popularity of SO<sub>4</sub><sup>2–</sup> ions with a <i>C</i><sub><i>s</i></sub> point group symmetry is characteristic for the intermediate
stage, while mostly SO<sub>4</sub><sup>2–</sup> ions exhibit
a <i>C</i><sub>3<i>v</i></sub> symmetry. There
is no clear relevance between cation ratio and water content at which
a polytype transition happens. The configurational adjustments of
NO<sub>3</sub><sup>–</sup> and SO<sub>4</sub><sup>2–</sup> ions facilitate the swelling behavior of LDHs. LDHs with CO<sub>3</sub><sup>2–</sup> or Cl<sup>–</sup> ions always
maintain a 3<i>R</i><sub>1</sub> polytype irrespective of
water content and hardly swell. The configurations of anions and water
reflect local coordination structure due to hydrogen bonds. The layer-stacking
way influences long-ranged Coulombic interactions. Hydrogen-bonding
structure and long-ranged Coulombic interactions collectively determine
polytypism and stability of LDHs
Closest-Packing Water Monolayer Stably Intercalated in Phyllosilicate Minerals under High Pressure
The
directional hydrogen-bond (HB) network and nondirectional van der
Waals (vdW) interactions make up the specificity of water. Directional
HBs could construct an ice-like monolayer in hydrophobic confinement
even in the ambient regime. Here, we report a water monolayer dominated
by vdW interactions confined in a phyllosilicate interlayer under
high pressure. Surprisingly, it was in a thermodynamically stable
state coupled with bulk water at the same pressure (P) and temperature (T), as revealed by the thermodynamic
integration approach on the basis of molecular dynamics (MD) simulations.
Both classical and ab initio MD simulations showed water O atoms were
stably trapped and exhibited an ordered hexagonal closest-packing
arrangement, but OH bonds of water reoriented frequently and exhibited
a specific two-stage reorientation relaxation. Strikingly, hydration
in the interlayer under high pressure had no relevance with surface
hydrophilicity rationalized by the HB forming ability, which, however,
determines wetting in the ambient regime. Intercalated water molecules
were trapped by vdW interactions, which shaped the closest-packing
arrangement and made hydration energetically available. The high pressure–volume
term largely drives hydration, as it compensates the entropy penalty
which is restricted by a relatively lower temperature. This vdW water
monolayer should be ubiquitous in the high pressure but low-temperature
regime
Closest-Packing Water Monolayer Stably Intercalated in Phyllosilicate Minerals under High Pressure
The
directional hydrogen-bond (HB) network and nondirectional van der
Waals (vdW) interactions make up the specificity of water. Directional
HBs could construct an ice-like monolayer in hydrophobic confinement
even in the ambient regime. Here, we report a water monolayer dominated
by vdW interactions confined in a phyllosilicate interlayer under
high pressure. Surprisingly, it was in a thermodynamically stable
state coupled with bulk water at the same pressure (P) and temperature (T), as revealed by the thermodynamic
integration approach on the basis of molecular dynamics (MD) simulations.
Both classical and ab initio MD simulations showed water O atoms were
stably trapped and exhibited an ordered hexagonal closest-packing
arrangement, but OH bonds of water reoriented frequently and exhibited
a specific two-stage reorientation relaxation. Strikingly, hydration
in the interlayer under high pressure had no relevance with surface
hydrophilicity rationalized by the HB forming ability, which, however,
determines wetting in the ambient regime. Intercalated water molecules
were trapped by vdW interactions, which shaped the closest-packing
arrangement and made hydration energetically available. The high pressure–volume
term largely drives hydration, as it compensates the entropy penalty
which is restricted by a relatively lower temperature. This vdW water
monolayer should be ubiquitous in the high pressure but low-temperature
regime
Jumping Diffusion of Water Intercalated in Layered Double Hydroxides
Our
molecular dynamics simulation study shows water in the nanoconfined
monolayer in Cl<sup>–</sup>-Mg<sub>2</sub>Al-layered double
hydroxides (Mg<sub>2</sub>Al(OH)<sub>6</sub>Cl·<i>m</i>H<sub>2</sub>O) diffuses in a similar way as atoms in solid lattice.
A water molecule is mostly fixed in a hydroxyl group site, as an acceptor
of hydrogen bonds donated by the upper and lower hydroxyl groups simultaneously.
Because of exchange of acceptors, it loses hydrogen bonds from the
two hydroxyl groups and accepts hydrogen bonds from another two groups
in an adjacent site. Thus, a water molecule jumps from one site to
another, which is rapid but rare. On average it takes ∼10<sup>4</sup> ps for a jump to happen on a water molecule. The diffusion
coefficient derived by the jump model is of the same order (∼10<sup>–9</sup> cm<sup>2</sup>/s) as that obtained by fitting the
mean-square displacement, revealing water diffusion in the confined
monolayer is largely contributed by a series of jump events
Surface Heterogeneity of SiO<sub>2</sub> Polymorphs: An XPS Investigation of α‑Quartz and α‑Cristobalite
Silica
minerals, one of the most abundant mineral species on the
earth, play important roles in geochemistry and environment processes.
The diversity of the SiO<sub>4</sub> tetrahedron polymerization style
might result in the heterogeneity of the surface microstructures and
properties of SiO<sub>2</sub> polymorphs. The surface properties of
two common crystalline SiO<sub>2</sub> polymorphs, i.e., α-quartz
and α-cristobalite, have been investigated by the surface site
density measurement, batch methylene blue (MB) adsorption, and X-ray
photoelectron spectroscopy (XPS). The Langmuir adsorption isotherms
suggest the formation of monolayer MB on both α-quartz and α-cristobalite
surfaces. The adsorption capacity of α-quartz toward MB is larger
than that of α-cristobalite, which positively correlates with
the density of surface site. XPS spectra reveal that the adsorption
takes place between the nitrogen atom of the dimethylamino groups
in MB and silanols on α-quartz and α-cristobalite surfaces.
The O/Si atom ratio related with adsorption of α-quartz is found
to be about 1.8:1, which is higher than that of α-cristobalite
(about 1.3:1). This suggests that there are two different silanol
species (single and germinal) related to adsorption on the surface
of α-quartz and α-cristobalite, and the higher O/Si ratio
implies a larger proportion of germinal silanols in α-quartz.
The N<sub>low</sub>/N<sub>high</sub> ratio (N<sub>low</sub> stands
for the N atoms with lower binding energy (399.2 eV), and N<sub>high</sub> for the N atoms with higher binding energy (399.7 eV)) changes to
about 2:1 with the adsorption saturation, implying that the space
arrangement of MB adsorbed on the surface was adjusted with the increase
of adsorption amount by lifting the average tilt angle between the
long axis of the MB molecule and the sample surface. The higher surface
site density of α-quartz leads to a larger average tilt angle,
while α-cristobalite does conversely
