Phylogenetic tree_JEV full genome

Phylogenetic profile showing the relationships between JEV/Bo/Aichi/1/2010 and other JEV isolates based on a comparison of the complete genome

Phylogenetic tree_JEV E region

Phylogenetic profile showing the relationships between JEV/Bo/Aichi/1/2010 and other JEV isolates based on a comparison of the E gene

Alignment_JEV E region

Aligned nucleotide sequences of the E gene of JEV/Bo/Aichi/1/2010 and other JEV isolates (aligned by using MEGA5)

Alignment_JEV full genome

Aligned nucleotide sequences of the complete genome of JEV/Bo/Aichi/1/2010 and other JEV isolates (aligned by using MEGA5)

Additional file 1: of Monitoring for bovine arboviruses in the most southwestern islands in Japan between 1994 and 2014

Primers used for RT-PCR and sequencing in this study. (XLSX 12 kb