Visualizing Reversible Two-Dimensional Phase Transitions in Oxygen Chemisorbed Layers

The interactions of a metallic surface with gaseous oxygen typically result in the formation of an oxygen chemisorbed layer that represents a true two-dimensional system in the limit of one atomic layer supported on a solid substrate. Using low-energy electron microscopy that temporally and spatially resolves phase transformations in such an oxygen chemisorbed layer on Cu(110), we demonstrate that the phase transformations are nucleation-limited on each terrace, and the resulting heterophase boundaries propagate exclusively on the same terrace with coordinated migration of surface steps. Using ab initio calculations based on density functional theory and thermodynamics considerations, we show the necessity of incorporating the effect of heterophase boundaries due to the co-existence of different phases as a criterion for predicting two-phase equilibria. It is also shown that the observed surface phase transformations are limited by the mass transport of Cu and O atoms on the parent phases instead of the two-phase boundary reactions. These results demonstrate that the oxygen chemisorbed layer serves as a model system to advance the fundamental understanding of phase behavior and dynamics in systems with reduced dimensionality, which may find broader applicability because such progressive stages of oxygen chemisorption-induced surface phase transformations and restructuring are generally involved in many metal–oxygen systems

Hydrogen-Induced Clustering of Metal Atoms in Oxygenated Metal Surfaces

Nearly, all metals form spontaneously an oxygenated surface upon exposure to air. Here, we demonstrate that the reaction of such an oxygenated surface with hydrogen results in the clustering of metal atoms. Using scanning electron microcopy, X-ray photoelectron spectroscopy, and in situ low-energy electron microscopy, we show that Cu atoms in the oxygenated Cu(110) surface self-assemble into Cu clusters upon the hydrogen-induced loss of the chemisorbed oxygen. It is shown that the clustering of Cu atoms occurs preferentially along the upper side of step edges formed by neighboring terraces of the substrate and boundaries of heterophase domains on the same terrace, followed by the spreading across the entire surface as the reaction progresses toward completion. Using density functional theory calculations, we show that the heterogeneous clustering of Cu atoms is induced by step-crossing barriers that hinder Cu atoms crossing descendent steps, thereby resulting in three-dimensional aggregation of Cu atoms on the upper side of step edges. These results may find broader applicability to tailor the formation of metal clusters for elucidating the intrinsic properties and functionalities of nanoclusters

Visualizing Reversible Two-Dimensional Phase Transitions in Oxygen Chemisorbed Layers

The interactions of a metallic surface with gaseous oxygen typically result in the formation of an oxygen chemisorbed layer that represents a true two-dimensional system in the limit of one atomic layer supported on a solid substrate. Using low-energy electron microscopy that temporally and spatially resolves phase transformations in such an oxygen chemisorbed layer on Cu(110), we demonstrate that the phase transformations are nucleation-limited on each terrace, and the resulting heterophase boundaries propagate exclusively on the same terrace with coordinated migration of surface steps. Using ab initio calculations based on density functional theory and thermodynamics considerations, we show the necessity of incorporating the effect of heterophase boundaries due to the co-existence of different phases as a criterion for predicting two-phase equilibria. It is also shown that the observed surface phase transformations are limited by the mass transport of Cu and O atoms on the parent phases instead of the two-phase boundary reactions. These results demonstrate that the oxygen chemisorbed layer serves as a model system to advance the fundamental understanding of phase behavior and dynamics in systems with reduced dimensionality, which may find broader applicability because such progressive stages of oxygen chemisorption-induced surface phase transformations and restructuring are generally involved in many metal–oxygen systems

Visualizing Reversible Two-Dimensional Phase Transitions in Oxygen Chemisorbed Layers

The interactions of a metallic surface with gaseous oxygen typically result in the formation of an oxygen chemisorbed layer that represents a true two-dimensional system in the limit of one atomic layer supported on a solid substrate. Using low-energy electron microscopy that temporally and spatially resolves phase transformations in such an oxygen chemisorbed layer on Cu(110), we demonstrate that the phase transformations are nucleation-limited on each terrace, and the resulting heterophase boundaries propagate exclusively on the same terrace with coordinated migration of surface steps. Using ab initio calculations based on density functional theory and thermodynamics considerations, we show the necessity of incorporating the effect of heterophase boundaries due to the co-existence of different phases as a criterion for predicting two-phase equilibria. It is also shown that the observed surface phase transformations are limited by the mass transport of Cu and O atoms on the parent phases instead of the two-phase boundary reactions. These results demonstrate that the oxygen chemisorbed layer serves as a model system to advance the fundamental understanding of phase behavior and dynamics in systems with reduced dimensionality, which may find broader applicability because such progressive stages of oxygen chemisorption-induced surface phase transformations and restructuring are generally involved in many metal–oxygen systems

Visualizing Reversible Two-Dimensional Phase Transitions in Oxygen Chemisorbed Layers

The interactions of a metallic surface with gaseous oxygen typically result in the formation of an oxygen chemisorbed layer that represents a true two-dimensional system in the limit of one atomic layer supported on a solid substrate. Using low-energy electron microscopy that temporally and spatially resolves phase transformations in such an oxygen chemisorbed layer on Cu(110), we demonstrate that the phase transformations are nucleation-limited on each terrace, and the resulting heterophase boundaries propagate exclusively on the same terrace with coordinated migration of surface steps. Using ab initio calculations based on density functional theory and thermodynamics considerations, we show the necessity of incorporating the effect of heterophase boundaries due to the co-existence of different phases as a criterion for predicting two-phase equilibria. It is also shown that the observed surface phase transformations are limited by the mass transport of Cu and O atoms on the parent phases instead of the two-phase boundary reactions. These results demonstrate that the oxygen chemisorbed layer serves as a model system to advance the fundamental understanding of phase behavior and dynamics in systems with reduced dimensionality, which may find broader applicability because such progressive stages of oxygen chemisorption-induced surface phase transformations and restructuring are generally involved in many metal–oxygen systems

DataSheet_1_Single-Cell Transcriptomic Analysis of Ecosystems in Papillary Thyroid Carcinoma Progression.zip

BackgroundDespite extensive research, the papillary thyroid carcinoma (PTC) ecosystem is poorly characterized and, in particular, locoregional progression. Available evidence supports that single-cell transcriptome sequencing (Sc-RNA seq) can dissect tumor ecosystems.MethodsTissue samples from one PTC patient, including matched primary tumor (Ca), lymph node (LN) metastasis, and paracancerous tissue (PCa), were subjected to Sc-RNA seq with 10×Genomics. Dual-label immunofluorescence and immunohistochemistry were used to confirm the existence of cell subtypes in a separate cohort.Results11,805 cell transcriptomes were profiled, cell landscapes of PTC were composed of malignant follicular epithelial cells (MFECs), CD8+ and CD4+ T cells, B cells, vascular endothelial cells, fibroblasts and cancer-associated fibroblasts (CAFs). Between Ca and LN ecosystems, the proportions of MFEC and interstitial cells were similar, less than 1/25(229/6,694, 361/3,895), while the proportion of normal follicular epithelial cells (NFECs) and interstitial cells was > 2 in PCa (455/171). NFECs in PCa formed a separate cluster, while MFECs in Ca and LN exhibited a profound transcriptional overlap, and the interstitial cells among these samples had an overall concordance in their identity and representation, albeit with some distinctions in terms of the cell percentage per subset. A fraction of the B cell subpopulation in Ca expressed inhibitory receptors, while their respective ligand genes were clearly transcribed in T cell and malignant epithelial cell clusters, while some CD8+ T cells in both Ca and LN produced high levels of inhibitory receptors whose respective ligands were overexpressed in some CD4+ T cells. Three CAF subtypes in Ca and LN were identified, which may be due to mutual transitions.ConclusionsOur data provide new insights into the PTC ecosystem and highlight the differences in ecosystems in PTC progression, which updates our understanding of PTC biology and will improve individualized patient treatment.</p

Visualizing Reversible Two-Dimensional Phase Transitions in Oxygen Chemisorbed Layers

The interactions of a metallic surface with gaseous oxygen typically result in the formation of an oxygen chemisorbed layer that represents a true two-dimensional system in the limit of one atomic layer supported on a solid substrate. Using low-energy electron microscopy that temporally and spatially resolves phase transformations in such an oxygen chemisorbed layer on Cu(110), we demonstrate that the phase transformations are nucleation-limited on each terrace, and the resulting heterophase boundaries propagate exclusively on the same terrace with coordinated migration of surface steps. Using ab initio calculations based on density functional theory and thermodynamics considerations, we show the necessity of incorporating the effect of heterophase boundaries due to the co-existence of different phases as a criterion for predicting two-phase equilibria. It is also shown that the observed surface phase transformations are limited by the mass transport of Cu and O atoms on the parent phases instead of the two-phase boundary reactions. These results demonstrate that the oxygen chemisorbed layer serves as a model system to advance the fundamental understanding of phase behavior and dynamics in systems with reduced dimensionality, which may find broader applicability because such progressive stages of oxygen chemisorption-induced surface phase transformations and restructuring are generally involved in many metal–oxygen systems

Revealing an Intermediate Cu–O/OH Superstructure on Cu(110)

Identifying the atomic structure and formation mechanism of intermediates during chemical transformations is challenging because of their short-lived nature. With a combination of microscopic and spectroscopic measurements and first-principles calculations, herein we report the formation of a metastable intermediate Cu–O/OH superstructure during the reaction of hydrogen with oxygen-covered Cu(110). This superstructure resembles the parent c(6 × 2)-O phase and can be termed as c(6 × 2)-(4O+2OH) with OH groups occupying the missing Cu sites between isolated Cu atoms. Using atomistic calculations, we elucidate the reaction pathways leading to the c(6 × 2)-(4O+2OH) formation via both molecular and dissociative H2 adsorption. These results demonstrate the complex surface dynamics resulting from the parallel reaction pathways and may open up the possibility of directing the reaction dynamics by deliberately manipulating transient surface structure and composition