4 research outputs found
Signatures of Nanoconfinement on the Linear and Nonlinear Vibrational Spectroscopy of a Model Hydrogen-Bonded Complex Dissolved in a Polar Solvent
The
one-dimensional IR (1D-IR) absorption and IR pump–probe
spectra of a hydrogen stretch in a model hydrogen-bonded complex dissolved
in a polar solvent confined in spherical hydrophobic cavities of different
sizes were simulated using ground-state mixed quantum-classical dynamics.
Due to a thorough analysis of key properties of the complex and solvent
from equilibrium trajectory data, we were able to gain insight into
the microscopic details underlying the spectra. Both the 1D-IR and
IR pump–probe spectra manifested the effects of confinement
on the relative stabilities of the covalent and ionic forms of the
complex through pronounced changes in their peak intensities and numbers.
However, in contrast to the 1D-IR spectra, the time-resolved pump–probe
spectra were found to be uniquely sensitive to the changes in the
molecular dynamics as the cavity size is varied. In particular, it
was found that the variations in the time evolutions of the peak intensities
in the pump–probe spectra reflect the differences in the solvation
dynamics associated with the various forms of the complex in different
locations within the cavities. The ability to detect these differences
underscores the advantage of using pump–probe spectroscopy
for studying nanoconfined systems
Efficient and Deterministic Propagation of Mixed Quantum-Classical Liouville Dynamics
We
propose a highly efficient mixed quantum-classical molecular
dynamics scheme based on a solution of the quantum-classical Liouville
equation (QCLE). By casting the equations of motion for the quantum
subsystem and classical bath degrees of freedom onto an approximate
set of coupled first-order differential equations for <i>c</i>-numbers, this scheme propagates the composite system in time deterministically
in terms of independent classical-like trajectories. To demonstrate
its performance, we apply the method to the spin-boson model, a photoinduced
electron transfer model, and a Fenna–Matthews–Olsen
complex model, and find excellent agreement out to long times with
the numerically exact results, using several orders of magnitude fewer
trajectories than surface-hopping solutions of the QCLE. Owing to
its accuracy and efficiency, this method promises to be very useful
for studying the dynamics of mixed quantum-classical systems
Self-Consistent Filtering Scheme for Efficient Calculations of Observables via the Mixed Quantum-Classical Liouville Approach
Over
the past decade, several algorithms have been developed for
calculating observables using mixed quantum-classical Liouville dynamics,
which differ in how accurately they solve the quantum-classical Liouville
equation (QCLE). One of these algorithms, known as sequential short-time
propagation (SSTP), is a surface-hopping algorithm that solves the
QCLE almost exactly, but obtaining converged values of observables
requires very large ensembles of trajectories due to the rapidly growing
statistical errors inherent to this algorithm. To reduce the ensemble
sizes, two filtering schemes (viz., observable cutting and transition
filtering) have been previously developed and effectively applied
to both simple and complex models. However, these schemes are either
ad hoc in nature or require significant trial and error for them to
work as intended. In this study, we present a self-consistent scheme,
which, in combination with a soundly motivated probability function
used for the Monte Carlo sampling of the nonadiabatic transitions,
avoids the ad hoc observable cutting and reduces the amount of trial
and error required for the transition filtering to work. This scheme
is tested on the spin-boson model, in the weak, intermediate, and
strong coupling regimes. Our transition filtered results obtained
using a newly proposed probability function, which favors the sampling
of nonadiabatic transitions with small energy gaps, show a significant
improvement in accuracy and efficiency for all coupling regimes over
the results obtained using observable cutting and the original implementation
of transition filtering and are comparable to those obtained using
the combination of these two techniques. It is therefore expected
that this novel scheme will substantially reduce ensemble sizes and
simplify the computation of observables in more complex systems
The Role of Hydrogen Bonding in the Decomposition of H<sub>2</sub>CO<sub>3</sub> in Water: Mechanistic Insights from Ab Initio Metadynamics Studies of Aqueous Clusters
Both concerted and stepwise mechanisms
have been proposed for the
decomposition of H<sub>2</sub>CO<sub>3</sub> in bulk water based on
electronic structure and ab initio molecular dynamics calculations.
To consistently determine which, if any, mechanism predominates in
bulk water, we performed ab initio metadynamics simulations of the
decomposition of H<sub>2</sub>CO<sub>3</sub> in water clusters of
increasing size. We found that, in the small clusters (containing
six and nine water molecules), the decomposition occurs according
to a concerted proton shuttle mechanism via a cyclic transition state,
whereas, in the larger clusters (containing 20 and 45 water molecules),
the decomposition occurs according to a two-step mechanism via a solvent-separated
HCO<sub>3</sub><sup>–</sup>/H<sub>3</sub>O<sup>+</sup> ion pair intermediate. Due to the additional
water molecules in the larger clusters, the dissociation of H<sub>2</sub>CO<sub>3</sub> into the metastable solvent-separated ion pair
was found to be energetically favorable, thereby preventing the formation
of the cyclic transition state and committing the decomposition to
the sequential route. An analysis of the solvation environment around
the H<sub>2</sub>CO<sub>3</sub> molecule in the various clusters revealed
that the transition from the concerted mechanism to the stepwise mechanism
precisely hinges upon the number of water molecules hydrogen bonded
to the H<sub>3</sub>O<sup>+</sup> intermediate, which changes as the
size of the cluster increases. The larger clusters contain a sufficient
number of water molecules to fully solvate the H<sub>3</sub>O<sup>+</sup> intermediate, indicating that they can provide a bulk-like
environment for this reaction. Therefore, these results strongly demonstrate
that the decomposition of H<sub>2</sub>CO<sub>3</sub> in bulk water
occurs via the stepwise mechanism