SIV RNA levels in genital tract tissues at 11 weeks post infection.

b<p>log10 vRNA copies per ug tissue RNA.</p

Neighbor joining tree of SGA derived <i>env</i> sequences from macaque 36199.

<p>Midpoint rooted Neighbor-joining tree of the <i>env</i> sequences from SIVmac251 infected animal 36199, 11 weeks post-infection. Bar represents 0.001 nucleotide substitutions per site.</p

Highlighter plots of SGA derived <i>env</i> sequences from macaque 36338.

<p>(A) Highlighter plot of SIV <i>env</i> nucleotide sequences from blood plasma (red), epididymis (purple), axillary lymph node (green), prostate (yellow), seminal vesicle (blue) and testis (orange) in male macaque 36338, 11 weeks post infection with SIVmac251. Individual nucleotide polymorphisms are indicated by green (adenine), red (thymine), yellow (guanine), or blue (cytosine) ticks and are in comparison to master sequence 1BP11_01. Gaps are indicated in gray. (B) Highlighter plot of SIV env amino acid sequences from tissues.</p

SIV RNA levels in blood plasma, seminal plasma and semen cells.

a<p>log10 vRNA copies per ml blood plasma and seminal plasma.</p>b<p>log10 vRNA copies per ug cellular RNA.</p

Highlighter plots of SGA derived env sequences from macaque 36199.

<p>(A) Highlighter plot of SIV <i>env</i> nucleotide sequences from blood plasma (red), epididymis (purple), axillary lymph node (green), prostate (yellow), seminal vesicle (blue) and testis (orange) in male macaque 36199. Sequences from blood plasma and seminal plasma are from 5, 8, 9, and 11 weeks post-infection. Sequences from epididymis, axillary lymph node, prostate, and testis were taken 11 weeks post-infection with SIVmac251. Individual nucleotide polymorphisms are indicated by green (adenine), red (thymine), yellow (guanine), or blue (cytosine) ticks and are in comparison to master sequence 4BP05_01. Gaps are indicated in gray. (B) Highlighter plot of SIV <i>env</i> amino acid sequences from tissues.</p

Neighbor Joining tree of SGA derived <i>env</i> sequences from macaque 36338.

<p>Midpoint rooted Neighbor-joining trees of the <i>env</i> sequences from SIVmac251 infected animal 36338 at 11 weeks post infection. Bar represents 0.001 nucleotide substitutions per site.</p