Additional file 7: of QTL mapping and candidate genes for resistance to Fusarium ear rot and fumonisin contamination in maize

Table S5. List of candidate genes for Fusarium verticillioides resistance in the 1-LOD and 2-LOD confidence interval in the genomic regions containing QTLs for FER and FB1 contamination. (XLSX 100 kb

Manhattan plot displaying the −log₁₀(<i>p</i>-value) results of the genome wide scan (Group A).

<p>Manhattan plot displaying the −log₁₀(<b><i>p</i></b>-value) results of the genome-wide scan using the GRAMMAR-GC method with respect to their Btau4.0 genomic position for an association with <i>Mycobaterium avium</i> subspecies <i>paratuberculosis</i> defining a case as an animal that is <i>MAP</i> ELISA or tissue positive and a control as an animal that is <i>MAP</i> ELISA or tissue negative <b>(Group A)</b>.</p

Additional file 5: Table S3. of RNA sequencing-based analysis of the spleen transcriptome following infectious bronchitis virus infection of chickens selected for different mannose-binding lectin serum concentrations

Differentially expressed genes (FDR < 0.05) for comparison between L10L and L10H uninfected birds at week 3. (TXT 100 kb

Additional file 17: Figure S4. of RNA sequencing-based analysis of the spleen transcriptome following infectious bronchitis virus infection of chickens selected for different mannose-binding lectin serum concentrations

Network representation of enriched GO Immune System terms of differentially expressed (DE) genes for comparison between uninfected birds at week 3. The GO Immune System terms were identified as nodes and linked based on their kappa score level (> = 0.4) and p-value < 0.001. Functionally related groups partially overlapped. The GO terms are labelled in colours according to hierarchical clustering of GO terms. Terms which have not been grouped are shown in grey. The color pie charts of the GO Immune system nodes show the gene proportion associated with the respective term. (PDF 55 kb

Additional file 16: Figure S3. of RNA sequencing-based analysis of the spleen transcriptome following infectious bronchitis virus infection of chickens selected for different mannose-binding lectin serum concentrations

Network representation of enriched GO Immune System terms of differentially expressed (DE) genes for comparison between uninfected birds at week 1. The GO Immune System terms were identified as nodes and linked based on their kappa score level (> = 0.4) and p-value < 0.001. Functionally related groups partially overlapped. The GO terms are labelled in colors according to hierarchical clustering of GO terms. Terms which have not been grouped are shown in grey. The colour pie charts of the GO Immune system nodes show the gene proportion associated with the respective term. (PDF 60 kb

Variant discovery in <i>PpeMYB25</i> (annotation refinement of <i>ppa023143m</i>).

<p>Five nectarine genotypes (‘Madonna di Agosto’, MdA; ‘Quetta’, Q; ‘Stark Red Gold’, SRG; ‘Goldmine’, G; ‘Ambra’, A) were analyzed to confirm the presence of the insertion within exon 3 of <i>PpeMYB25</i>. (A) Long-range amplification products reveal for all the accessions a fragment of about 7 kb (compared to 960 bp expected from the reference genome). (B) Double digestion results of the long-range PCR products show the same pattern for all the genotypes. (C) Position and structure of the Ty-<i>copia</i> retrotransposon deduced by the by the NGS analysis of ‘Quetta’ long-range amplicon. The insertion results in a truncated version of the R2R3-MYB protein.</p

Additional file 14: Table S12. of RNA sequencing-based analysis of the spleen transcriptome following infectious bronchitis virus infection of chickens selected for different mannose-binding lectin serum concentrations

Differentially expressed genes (FDR < 0.05) for comparison between uninfected and infected L10H birds at week 1. (TXT 88 kb

Additional file 7: Table S5. of RNA sequencing-based analysis of the spleen transcriptome following infectious bronchitis virus infection of chickens selected for different mannose-binding lectin serum concentrations

Differentially expressed genes (FDR < 0.05) for comparison between L10L and L10H infected birds at week 3. (TXT 61 kb

Additional file 2: Figure S1. of RNA sequencing-based analysis of the spleen transcriptome following infectious bronchitis virus infection of chickens selected for different mannose-binding lectin serum concentrations

Multidimensional scaling (MDS) plot created using expression profiles of all normalized genes. Four MDS plots were created using the normalized gene count data set. The purpose of MDS plot is to provide a visual representation of the pattern of proximities (similarities or distances) among the set of studied birds. Plots are labeled by eight comparison groups and three different factor levels; status (uninfected and infected), line (L10L and L10H) and time (weeks 1 and 3). The plot was created using the “plotMDS.dge” function implemented in the edgeR package. In all plots, L10H_CTL_W1 (red, n = 8), L10H_CTL_W3 (blue, n = 7), L10H_INF_W1 (green, n = 8), L10H_INF_W3 (purple, n = 7), L10L_CTL_W1 (orange, n = 8), L10L_CTL_W3 (yellow, n = 8), L10L_INF_W1 (brown, n = 6), L10L_INF_W3 (pink, n = 8). (PDF 6 kb

Measurement of inventories in the Czech Republic and according to IFRS

The content of this bachelor thesis analyses measurement methods of inventories according to Czech accounting legislation and International Financial Reporting Standards (IFRS). Prior to the analysis, the accounting approaches themselves and the exact objective of inventories are described. The aim of the thesis is to compare measurement methods of inventories according to Czech legislation and IFRS with emphasis on the evaluation of their differences