Jackknife

Results of 108-locus and 20-locus jackknife analyses. See Figure 3

OrthologID Output

Data partitions from OrthologID aligned and in NEXUS format. "full" dataset includes all orthologs recovered and "m27" includes only partitions present in at least 27 taxa

Code

Scripts used in analyses and plotting selected figures. See also https://github.com/marekborowiec/metazoan_phylogenomics/blob/master/gene_stats.

PartitionFinder Results

Control files, data and results for all PartitionFinder analyses on concatenated matrices conducted in the study

PhyloBayes Results

Results of all PhyloBayes analyses conducted in the study including Bayesien posterior densities and traces of selected parameters as well as consensus trees

Partition Statistics

Spreadsheet containing data for all of the partition-specific statistics used to construct the various matrices described in the paper

Single Gene Alignments

Trimmed alignments for all 1080 loci in FASTA format

Data Matrices

All concatenated matrices in PHYLIP and NEXUS formats. The names of the concatenated matrices correspond to Table 1

Number of differentially expressed genes found with increasing sequencing depth in comparisons of the sting gland and digestive tract.

<p>Nurse sting gland is compared to nurse digestive tract in part A, and forager sting gland is compared to forager digestive tract in part B.</p

Topology_tests

Results of Bayesian tests of topology carried out in MrBayes. Subfolder names correspond to alternative topologies tested. See Table 2 and manuscript text for explanations