Probing the orientation of porphyrin oligomers in a liquid crystal solvent – a triplet state electron paramagnetic resonance study

Linear porphyrin oligomers have found various applications as synthetic molecular wires in the context of light harvesting, solar energy conversion and molecular electronics. In many of these applications a partial ordering of the molecules helps to improve the reaction efficiency or device performance. In this work we study the orientational properties of the building blocks of such porphyrin-based molecular wires, namely a porphyrin monomer and the corresponding butadiyne-bridged dimer. The porphyrins have been embedded in the nematic liquid crystal solvent 4-cyano-4'-pentylbiphenyl (5CB) and the anisotropic properties of their photogenerated triplet states were characterised by transient electron paramagnetic resonance (EPR) spectroscopy. When aligned in strong magnetic fields, the liquid crystal molecules impose their orientational anisotropy onto the solute guest molecules whose orientation-dependent magnetic properties can then be explored. The line shape analysis of the porphyrin triplet state EPR spectra – highly sensitive to small conformational changes – confirms the orientation of the zero-field-splitting (ZFS) tensors previously determined for these molecules by magnetophotoselection experiments. A biaxial distribution function is shown to be necessary to simulate the experimental EPR data. The biaxial behaviour, in conjunction with symmetry considerations, allows an unambiguous assignment of the three ZFS tensor axes to the molecular axes. From the determined orientational distributions of the porphyrins in 5CB, the biaxial order parameters for both molecules were calculated.</p

Spin Delocalization in the Radical Cations of Porphyrin Molecular Wires: A New Perspective on EPR Approaches

The spin delocalization in the radical cations of a series of ethyne-linked oligoporphyrins was investigated using EPR spectroscopy. The room-temperature spectral envelope for these oligomers deviates significantly from the benchmark N–0.5 trend in line width expected for a completely delocalized spin density, in contrast to the butadiyne-linked analogues measured previously. Here, we show, using DFT calculations and complementary low-temperature ENDOR measurements, that this deviation is primarily driven by a more pronounced inequivalence of the 14N spins within individual subunits for the ethyne-linked oligoporphyrins. Once this 14N inequivalence is taken into consideration, the room-temperature and ENDOR spectra for both butadiyne-linked and ethyne-linked oligomers, up to N = 5, can be simulated by similar static delocalization patterns. This work highlights the importance of EPR in exploring such spin delocalization phenomena while also demonstrating that the N–0.5 trend should not be interpreted in isolation but only in combination with careful simulation and theoretical modeling

Protein Surface Interactions Probed by Magnetic Field Effects on Chemical Reactions

Protein Surface Interactions Probed by Magnetic Field Effects on Chemical Reaction

Spin Delocalization in the Radical Cations of Porphyrin Molecular Wires: A New Perspective on EPR Approaches

The spin delocalization in the radical cations of a series of ethyne-linked oligoporphyrins was investigated using EPR spectroscopy. The room-temperature spectral envelope for these oligomers deviates significantly from the benchmark N–0.5 trend in line width expected for a completely delocalized spin density, in contrast to the butadiyne-linked analogues measured previously. Here, we show, using DFT calculations and complementary low-temperature ENDOR measurements, that this deviation is primarily driven by a more pronounced inequivalence of the 14N spins within individual subunits for the ethyne-linked oligoporphyrins. Once this 14N inequivalence is taken into consideration, the room-temperature and ENDOR spectra for both butadiyne-linked and ethyne-linked oligomers, up to N = 5, can be simulated by similar static delocalization patterns. This work highlights the importance of EPR in exploring such spin delocalization phenomena while also demonstrating that the N–0.5 trend should not be interpreted in isolation but only in combination with careful simulation and theoretical modeling

Radio Frequency Magnetic Field Effects on a Radical Recombination Reaction: A Diagnostic Test for the Radical Pair Mechanism

The photoinduced electron-transfer reaction of chrysene with isomers of dicyanobenzene is used to demonstrate the sensitivity of a radical recombination reaction to the orientation and frequency (5−50 MHz) of a ∼300 μT radio frequency magnetic field in the presence of a 0−4 mT static magnetic field. The recombination yield is detected via the fluorescence of the exciplex formed exclusively from the electronic singlet state of the radical ion pair Chr•+/DCB•-. Magnetic field effects are simulated using a modified version of the γ-COMPUTE algorithm, devised for the simulation of magic angle spinning NMR spectra of powdered samples. The response of a chemical or biological system to simultaneously applied radio frequency and static or extremely low-frequency magnetic fields could form the basis for a diagnostic test for the operation of the radical pair mechanism that would not require prior knowledge of the nature and properties of the radical reaction

Determination of Radical Re-encounter Probability Distributions from Magnetic Field Effects on Reaction Yields

Measurements are reported of the effects of 0−23 mT applied magnetic fields on the spin-selective recombination of Py•- and DMA•+ radicals formed in the photochemical reaction of pyrene and N,N-dimethylaniline. Singlet ↔ triplet interconversion in [Py•- DMA•+] radical pairs is probed by investigating combinations of fully protonated and fully deuterated reaction partners. Qualitatively, the experimental B1/2 values for the four isotopomeric radical pairs agree with predictions based on the Weller equation using known hyperfine coupling constants. The amplitude of the “low field effect” (LFE) correlates well with the ratio of effective hyperfine couplings, 〈aDMA〉/〈aPy〉. An efficient method is introduced for calculating the spin evolution of [Py•- DMA•+] radical pairs containing a total of 18 spin-1/2 and spin-1 magnetic nuclei. Quantitative analysis of the magnetic field effects to obtain the radical re-encounter probability distribution f (t )a highly ill-posed and underdetermined problemis achieved by means of Tikhonov and maximum entropy regularization methods. The resulting f (t ) functions are very similar for the four isotopomeric radical pairs and have significant amplitude between 2 and 10 ns after the creation of the geminate radical pair. This interval reflects the time scale of re-encounters that are crucial for generating the magnetic field effect. Computer simulations of generalized radical pairs containing six spin-1/2 nuclei show that Weller's equation holds approximately only when the radical pair recombination rate is comparable to the two effective hyperfine couplings and that a substantial LFE requires, but is not guaranteed by, the condition that the two effective hyperfine couplings differ by more than a factor of 5. In contrast, for very slow recombination, essentially any radical pair should show a significant LFE

Electronic Delocalization in the Radical Cations of Porphyrin Oligomer Molecular Wires

The radical cations of a family of π-conjugated porphyrin arrays have been investigated: linear chains of <i>N</i> = 1–6 porphyrins, a 6-porphyrin nanoring and a 12-porphyrin nanotube. The radical cations were generated in solution by chemical and electrochemical oxidation, and probed by vis–NIR–IR and EPR spectroscopies. The cations exhibit strong NIR bands at ∼1000 nm and 2000–5000 nm, which shift to longer wavelength with increasing oligomer length. Analysis of the NIR and IR spectra indicates that the polaron is delocalized over 2–3 porphyrin units in the linear oligomers. Some of the IR vibrational bands are strongly intensified on oxidation, and Fano-type antiresonances are observed when activated vibrations overlap with electronic transitions. The solution-phase EPR spectra of the radical cations have Gaussian lineshapes with linewidths proportional to <i>N</i>^–0.5, demonstrating that at room temperature the spin hops rapidly over the whole chain on the time scale of the hyperfine coupling (ca. 100 ns). Direct measurement of the hyperfine couplings through electron–nuclear double resonance (ENDOR) in frozen solution (80 K) indicates distribution of the spin over 2–3 porphyrin units for all the oligomers, except the 12-porphyrin nanotube, in which the spin is spread over about 4–6 porphyrins. These experimental studies of linear and cyclic cations give a consistent picture, which is supported by DFT calculations and multiparabolic modeling with a reorganization energy of 1400–2000 cm^–1 and coupling of 2000 cm^–1 for charge transfer between neighboring sites, placing the system in the Robin–Day class III

The Short-Lived Signaling State of the Photoactive Yellow Protein Photoreceptor Revealed by Combined Structural Probes

The signaling state of the photoactive yellow protein (PYP) photoreceptor is transiently developed via isomerization of its blue-light-absorbing chromophore. The associated structural rearrangements have large amplitude but, due to its transient nature and chemical exchange reactions that complicate NMR detection, its accurate three-dimensional structure in solution has been elusive. Here we report on direct structural observation of the transient signaling state by combining double electron electron resonance spectroscopy (DEER), NMR, and time-resolved pump–probe X-ray solution scattering (TR-SAXS/WAXS). Measurement of distance distributions for doubly spin-labeled photoreceptor constructs using DEER spectroscopy suggests that the signaling state is well ordered and shows that interspin-label distances change reversibly up to 19 Å upon illumination. The SAXS/WAXS difference signal for the signaling state relative to the ground state indicates the transient formation of an ordered and rearranged conformation, which has an increased radius of gyration, an increased maximum dimension, and a reduced excluded volume. Dynamical annealing calculations using the DEER derived long-range distance restraints in combination with short-range distance information from 1H–15N HSQC perturbation spectroscopy give strong indication for a rearrangement that places part of the N-terminal domain in contact with the exposed chromophore binding cleft while the terminal residues extend away from the core. Time-resolved global structural information from pump–probe TR-SAXS/WAXS data supports this conformation and allows subsequent structural refinement that includes the combined energy terms from DEER, NMR, and SAXS/WAXS together. The resulting ensemble simultaneously satisfies all restraints, and the inclusion of TR-SAXS/WAXS effectively reduces the uncertainty arising from the possible spin-label orientations. The observations are essentially compatible with reduced folding of the I2′ state (also referred to as the ‘pB’ state) that is widely reported, but indicates it to be relatively ordered and rearranged. Furthermore, there is direct evidence for the repositioning of the N-terminal region in the I2′ state, which is structurally modeled by dynamical annealing and refinement calculations

Engineering an Artificial Flavoprotein Magnetosensor

Migratory birds use the Earth’s magnetic field as a source of navigational information. This light-dependent magnetic compass is thought to be mediated by cryptochrome proteins in the retina. Upon light activation, electron transfer between the flavin adenine dinucleotide cofactor and tryptophan residues leads to the formation of a spin-correlated radical pair, whose subsequent fate is sensitive to external magnetic fields. To learn more about the functional requirements of this complex chemical compass, we have created a family of simplified, adaptable proteinsmaquettesthat contain a single tryptophan residue at different distances from a covalently bound flavin. Despite the complete absence of structural resemblance to the native cryptochrome fold or sequence, the maquettes exhibit a strong magnetic field effect that rivals those observed in the natural proteins in vitro. These novel maquette designs offer unprecedented flexibility to explore the basic requirements for magnetic sensing in a protein environment