The Effects of Environmental Variables on Catch of Banana Prawns in the Australian Gulf of Carpentaria

No abstracts are to be cited without prior reference to the author. In this study the effect of moon phase and rainfall on the catch of banana prawns (Penaeus merguiensis) in the Gulf of Carpentaria (GoC) in Australia was estimated. These environmental factors affect behaviour, survival, migration and reproduction of banana prawn

Additional file 1 of Expected values for the accuracy of predicted breeding values accounting for genetic differences between reference and target populations

Additional file 1. Example_IGC. Sample code to simulate genotypes/phenotypes, perform genomic prediction and compute the index of genetic correlation (IGC) between reference and target populations

MOESM1 of Genome-wide linkage disequilibrium and genetic diversity in five populations of Australian domestic sheep

Additional file 1: Table S1. Summary statistics for the SNPs, average minor allele frequency and heterozygosity. Table S2. Average linkage disequilibrium (r2) between adjacent markers on the autosomes (OAR). Table S3. Average linkage disequilibrium (D’) between adjacent markers on the autosomes (OAR). Table S4. Chromosome-wise average linkage disequilibrium (D’) for each population studied. Table S5. Chromosome-wise average linkage disequilibrium (r2) for each population studied. Table S6. Summary of the chromosome-wise haplotype analysis. Table S7. Range of inbreeding coefficients for each population studied. Table S8. Mean linkage disequilibrium in the five populations at varying map distances. Table S9. List of the genes located in the region between 49.2 and 51.2 Mb on OAR15

Additional file 5: of Gene expression of Hanwoo satellite cell differentiation in longissimus dorsi and semimembranosus

Table S3. Gene Ontology results for each of the time contrasts. (XLSX 73 kb

MOESM2 of Genome-wide linkage disequilibrium and genetic diversity in five populations of Australian domestic sheep

Additional file 2: Figure S1. Distribution of minor allele frequency (MAF) for each population studied. The percentage of SNP is plotted for each frequency bin. Figure S2. Average D' values for each population

Additional file 4: of Gene expression of Hanwoo satellite cell differentiation in longissimus dorsi and semimembranosus

Figure S2. Expression profile of LD and SM in log2 (cpm). (PDF 165 kb

Additional file 1: of Gene expression of Hanwoo satellite cell differentiation in longissimus dorsi and semimembranosus

Table S1. Summary of preprocessing of RNA-seq reads and mapping steps for each sample. (DOCX 17 kb

Additional file 2: of Gene expression of Hanwoo satellite cell differentiation in longissimus dorsi and semimembranosus

Figure S1. Principal component analysis of the expression profiles for each time point and muscle type. (PDF 60 kb

Additional file 6: of Gene expression of Hanwoo satellite cell differentiation in longissimus dorsi and semimembranosus

Table S4. Pathway enrichment analysis of contrasts over time for LD and SM. (XLSX 26 kb

Additional file 3: of Gene expression of Hanwoo satellite cell differentiation in longissimus dorsi and semimembranosus

Table S2. List of differentially expressed genes from the contrast LD vs SM and contrasts at each time point. (XLSX 380 kb