Controlling One-Electron vs Two-Electron Pathways in the Multi-Electron Redox Cycle of Nickel Diethyldithiocarbamate

The unique redox cycle of NiII(dtc)2, where dtc– is N,N-diethyldithiocarbamate, in acetonitrile displays 2e– redox chemistry upon oxidation from NiII(dtc)2 → [NiIV(dtc)3]+ but 1e– redox chemistry upon reduction from [NiIV(dtc)3]+ → NiIII(dtc)3 → NiII(dtc)2. The underlying reasons for this cycle lie in the structural changes that occur between four-coordinate NiII(dtc)2 and six-coordinate [NiIV(dtc)3]+. Cyclic voltammetry (CV) experiments show that these 1e– and 2e– pathways can be controlled by the addition of pyridine-based ligands (L) to the electrolyte solution. Specifically, the addition of these ligands resulted in a 1e– ligand-coupled electron transfer (LCET) redox wave, which produced a mixture of pyridine-bound Ni­(III) complexes, [NiIII(dtc)2(L)]+, and [NiIII(dtc)2(L)2]+. Although the complexes could not be isolated, electron paramagnetic resonance (EPR) measurements using a chemical oxidant in the presence of 4-methoxypyridine confirmed the formation of trans-[NiIII(dtc)2(L)2]+. Density functional theory calculations were also used to support the formation of pyridine coordinated Ni­(III) complexes through structural optimization and calculation of EPR parameters. The reversibility of the LCET process was found to be dependent on both the basicity of the pyridine ligand and the scan rate of the CV experiment. For strongly basic pyridines (e.g., 4-methoxypyridine) and/or fast scan rates, high reversibility was achieved, allowing [NiIII(dtc)2(L)x]+ to be reduced directly back to NiII(dtc)2 + xL. For weakly basic pyridines (e.g., 3-bromopyridine) and/or slow scan rates, [NiIII(dtc)2(L)x]+ decayed irreversibly to form [NiIV(dtc)3]+. Detailed kinetics studies using CV reveal that [NiIII(dtc)2(L)]+ and [NiIII(dtc)2(L)2]+ decay by parallel pathways due to a small equilibrium between the two species. The rate constants for ligand dissociation ([NiIII(dtc)2(L)2]+ → [NiIII(dtc)2(L)]+ + L) along with decomposition of [NiIII(dtc)2(L)]+ and [NiIII(dtc)2(L)2]+ species were found to increase with the electron-withdrawing character of the pyridine ligand, indicating pyridine dissociation is likely the rate-limiting step for decomposition of these complexes. These studies establish a general trend for kinetically trapping 1e– intermediates along a 2e– oxidation path

Archaeal pseudomurein and bacterial murein cell wall biosynthesis share a common evolutionary ancestry

Bacteria near-universally contain a cell wall sacculus of murein (peptidoglycan), the synthesis of which has been intensively studied for over 50 years. In striking contrast, archaeal species possess a variety of other cell wall types, none of them closely resembling murein. Interestingly though, one type of archaeal cell wall termed pseudomurein found in the methanogen orders Methanobacteriales and Methanopyrales is a structural analogue of murein in that it contains a glycan backbone that is cross-linked by a L-amino acid peptide. Here, we present taxonomic distribution, gene cluster and phylogenetic analyses that confirm orthologues of 13 bacterial murein biosynthesis enzymes in pseudomurein-containing methanogens, most of which are distantly related to their bacterial counterparts. We also present the first structure of an archaeal pseudomurein peptide ligase from Methanothermus fervidus DSM1088 (Mfer336) to a resolution of 2.5 Å and show that it possesses a similar overall tertiary three domain structure to bacterial MurC and MurD type murein peptide ligases. Taken together the data strongly indicate that murein and pseudomurein biosynthetic pathways share a common evolutionary history

The Active-Site [4Fe-4S] Cluster in the Isoprenoid Biosynthesis Enzyme IspH Adopts Unexpected Redox States during Ligand Binding and Catalysis

(E)-4-Hydroxy-3-methylbut-2-enyl diphosphate reductase, or IspH (formerly known as LytB), catalyzes the terminal step of the bacterial methylerythritol phosphate (MEP) pathway for isoprene synthesis. This step converts (E)-4-hydroxy-3-methylbut-2-enyl diphosphate (HMBPP) into one of two possible isomeric products, either isopentenyl diphosphate (IPP) or dimethylallyl diphosphate (DMAPP). This reaction involves the removal of the C4 hydroxyl group of HMBPP and addition of two electrons. IspH contains a [4Fe-4S] cluster in its active site, and multiple cluster-based paramagnetic species of uncertain redox and ligation states can be detected after incubation with reductant, addition of a ligand, or during catalysis. To characterize the clusters in these species, 57Fe-labeled samples of IspH were prepared and studied by electron paramagnetic resonance (EPR), 57Fe electron–nuclear double resonance (ENDOR), and Mössbauer spectroscopies. Notably, this ENDOR study provides a rarely reported, complete determination of the 57Fe hyperfine tensors for all four Fe ions in a [4Fe-4S] cluster. The resting state of the enzyme (Ox) has a diamagnetic [4Fe-4S]2+ cluster. Reduction generates [4Fe-4S]+ (Red) with both S = 1/2 and S = 3/2 spin ground states. When the reduced enzyme is incubated with substrate, a transient paramagnetic reaction intermediate is detected (Int) which is thought to contain a cluster-bound substrate-derived species. The EPR properties of Int are indicative of a 3+ iron–sulfur cluster oxidation state, and the Mössbauer spectra presented here confirm this. Incubation of reduced enzyme with the product IPP induced yet another paramagnetic [4Fe-4S]+ species (Red+P) with S = 1/2. However, the g-tensor of this state is commonly associated with a 3+ oxidation state, while Mössbauer parameters show features typical for 2+ clusters. Implications of these complicated results are discussed