fig4_mutations_in_founder_also_in_replay

Input file for fig. 4 R script. Summarizes mutations present in founders that also occurred in some replay clones. These mutations are omitted from calculation of the convergence metric

fig4_replay_clone_mutations

Input to fig4 R script. Summary of mutated genes in clones isolated from replay populations

fig1.b R script

R script to generate figure 1

fig3_anc-ev

Input data required to generate figure

fig4_PI_CI matrix

R script to generate figure 4

fig1.b input data

Input data necessary to generate figure 1

fig3

R script to generate figure

mutation_data

Summary of mutates genes identified in evolved clones isolated from replay population

fig1.b input data

Input data necessary to generate figure 1

PykF fitness effects: ancestor and 20K

Colony counts of competitions measuring the effect of pykF mutations in the ancestral strain (REL606) and in the 20,000 generation evolved strains each mutation was found in