Additional file 1 of Ultraplexing: increasing the efficiency of long-read sequencing for hybrid assembly with k-mer-based multiplexing

Additional file 1. Sample summary. Names, accessions and summary statistics of all utilized reference genomes

Additional file 3 of Ultraplexing: increasing the efficiency of long-read sequencing for hybrid assembly with k-mer-based multiplexing

Additional file 3. Main Evaluation Simulation Experiment I. Read classification and assembly accuracy in a simulation experiment with 10 different human pathogens

Additional file 5 of Ultraplexing: increasing the efficiency of long-read sequencing for hybrid assembly with k-mer-based multiplexing

Additional file 5. Main Evaluation Simulation Experiment II. Read classification and assembly accuracy in a simulation experiment with 10 – 50 S. aureus genomes

Additional file 8 of Ultraplexing: increasing the efficiency of long-read sequencing for hybrid assembly with k-mer-based multiplexing

Additional file 8. Putative plasmids (real data). BLAST results for contigs putatively representing plasmids in two real-data experiments

Additional file 6 of Ultraplexing: increasing the efficiency of long-read sequencing for hybrid assembly with k-mer-based multiplexing

Additional file 6. Incorrectly assembled plasmids (simulations). Incorrectly assembled or incompletely recovered plasmids in the simulated sets with 10 – 50 plasmid-containing S. aureus isolates

Additional file 7 of Ultraplexing: increasing the efficiency of long-read sequencing for hybrid assembly with k-mer-based multiplexing

Additional file 7. Main Evaluation Simulation Experiment III. Read classification and assembly accuracy in a simulation experiment with 10 – 50 plasmid-containing S. aureus genomes

Additional file 4 of Ultraplexing: increasing the efficiency of long-read sequencing for hybrid assembly with k-mer-based multiplexing

Additional file 4. Evaluation 3 Additional Simulation Experiments. Read classification and assembly accuracy for 3 additional simulation experiments (5 species x 2 strains, class I and class III S. aureus, 10 Pseudomonas)

Additional file 10 of Ultraplexing: increasing the efficiency of long-read sequencing for hybrid assembly with k-mer-based multiplexing

Additional file 10. Sequencing data summary. Summary statistics of all generated read sets (Oxford Nanopore and Illumina)

Additional file 13 of Ultraplexing: increasing the efficiency of long-read sequencing for hybrid assembly with k-mer-based multiplexing

Additional file 13. Review history

Additional file 9 of Ultraplexing: increasing the efficiency of long-read sequencing for hybrid assembly with k-mer-based multiplexing

Additional file 9. Evaluation of real-data experiments. Assembly accuracy and properties of the utilized reference genomes in two real-data experiments