Northwich time-series data.

<p>Dashed lines are the time points in which the forward simulation resets in the epidemics = ‘break’ argument for a threshold for three.</p

The forward simulations for the Northwich time-series data under an epidemic-ahead fit using a threshold of three.

<p>The color coding in the panels shown here are the same as in <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0185528#pone.0185528.g001" target="_blank">Fig 1</a>.</p

Summary and description of the main functions in the tsiR package.

<p>Summary and description of the main functions in the tsiR package.</p

Output results from the runtsir function for London.

<p>Subplots A) and B) are the cumulative births against cumulative cases regression and estimated reporting rate, the C) and D) are the profiled from <i>Z</i>_<i>t</i> and then reconstructed <i>S</i>, E) is 26-point <i>β</i>_<i>t</i> with the <i>α</i> and mean <i>β</i> (indicated as ) estimate, and F) and G) are the data (blue) against 10 randomly chosen stochastic simulations (red) and the (inverse) data against mean of the simulations with confidence intervals.</p