30 research outputs found
flu H1 Beast Nulldata file for generating the prior
No full textflu H1 Beast Nulldata file for generating the prio
Log-likelihood values and parameter estimates under site models for the nine mammalian BRCA1 genes.
No full text<p>Note.— <i>p</i>: Number of parameters including 15 branch lengths in the tree (<a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0003746#pone-0003746-g004" target="_blank">Figure 4</a>). Estimates of <i>κ</i> range from 3.4 to 3.6 among models. Sites potentially under positive selection are listed for different models, with the human sequence used as reference. The posterior probability <i>P</i> that a site is from the positive-selection class is calculated using BEB <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0003746#pone.0003746-Yang4" target="_blank">[17]</a>.</p
Sliding window plots of <i>d̂</i><i><sub>S</sub></i>, <i>d̂</i><i><sub>N</sub></i> and <i>ω̂</i> = <i>d̂</i><i><sub>N</sub></i>/<i>d̂</i><i><sub>S</sub></i> from two simulated data sets, generated under model M0 (one-ratio) using parameter estimates obtained from the comparison of the mouse and rat BRCA1 genes.
No full text<p>The window size is 100 codons, and the offset between windows is one codon.</p
