13 research outputs found
Additional file 1 of Effect of online intervention mode on breastfeeding results: a systematic review and meta-analysis
Additional file 1: Methods
Data-Driven Evolutionary Design of Multienzyme-like Nanozymes
Multienzyme-like nanozymes are nanomaterials with multiple
enzyme-like
activities and are the focus of nanozyme research owing to their ability
to facilitate cascaded reactions, leverage synergistic effects, and
exhibit environmentally responsive selectivity. However, multienzyme-like
nanozymes exhibit varying enzyme-like activities under different conditions,
making them difficult to precisely regulate according to the design
requirements. Moreover, individual enzyme-like activity in a multienzyme-like
activity may accelerate, compete, or antagonize each other, rendering
the overall activity a complex interplay of these factors rather than
a simple sum of single enzyme-like activity. A theoretically guided
strategy is highly desired to accelerate the design of multienzyme-like
nanozymes. Herein, nanozyme information was collected from 4159 publications
to build a nanozyme database covering element type, element ratio,
chemical valence, shape, pH, etc. Based on the clustering correlation
coefficients of the nanozyme information, the material features in
distinct nanozyme classifications were reorganized to generate compositional
factors for multienzyme-like nanozymes. Moreover, advanced methods
were developed, including the quantum mechanics/molecular mechanics
method for analyzing the surface adsorption and binding energies of
substrates, transition states, and products in the reaction pathways,
along with machine learning algorithms to identify the optimal reaction
pathway, to aid the evolutionary design of multienzyme-like nanozymes.
This approach culminated in creating CuMnCo7O12, a highly active multienzyme-like nanozyme. This process is named
the genetic-like evolutionary design of nanozymes because it resembles
biological genetic evolution in nature and offers a feasible protocol
and theoretical foundation for constructing multienzyme-like nanozymes
Data-Driven Evolutionary Design of Multienzyme-like Nanozymes
Multienzyme-like nanozymes are nanomaterials with multiple
enzyme-like
activities and are the focus of nanozyme research owing to their ability
to facilitate cascaded reactions, leverage synergistic effects, and
exhibit environmentally responsive selectivity. However, multienzyme-like
nanozymes exhibit varying enzyme-like activities under different conditions,
making them difficult to precisely regulate according to the design
requirements. Moreover, individual enzyme-like activity in a multienzyme-like
activity may accelerate, compete, or antagonize each other, rendering
the overall activity a complex interplay of these factors rather than
a simple sum of single enzyme-like activity. A theoretically guided
strategy is highly desired to accelerate the design of multienzyme-like
nanozymes. Herein, nanozyme information was collected from 4159 publications
to build a nanozyme database covering element type, element ratio,
chemical valence, shape, pH, etc. Based on the clustering correlation
coefficients of the nanozyme information, the material features in
distinct nanozyme classifications were reorganized to generate compositional
factors for multienzyme-like nanozymes. Moreover, advanced methods
were developed, including the quantum mechanics/molecular mechanics
method for analyzing the surface adsorption and binding energies of
substrates, transition states, and products in the reaction pathways,
along with machine learning algorithms to identify the optimal reaction
pathway, to aid the evolutionary design of multienzyme-like nanozymes.
This approach culminated in creating CuMnCo7O12, a highly active multienzyme-like nanozyme. This process is named
the genetic-like evolutionary design of nanozymes because it resembles
biological genetic evolution in nature and offers a feasible protocol
and theoretical foundation for constructing multienzyme-like nanozymes
Ortho-Substituted α‑Phenyl Mannoside Derivatives Promoted Early-Stage Adhesion and Biofilm Formation of <i>E. coli</i> 83972
Prevention
of catheter-associated urinary tract infection (CAUTI) over long-term
usage of urinary catheters remains a great challenge. Bacterial interference
using nonpathogenic bacteria, such as E. coli 83972,
have been investigated in many pilot-scale clinical studies as a potentially
nonantibiotic based strategy for CAUTI prevention. We have demonstrated
that preforming a dense and stable biofilm of the nonpathogenic E. coli greatly enhances their capability to prevent pathogen
colonization. Such nonpathogenic biofilms were formed by E.
coli 83972 expressing type 1 fimbriae (fim+ E. coli
83972) on mannoside-presenting surfaces. In this work, we
report the synthesis of a series of mannoside derivatives with a wide
range of binding affinities, all being equipped with a handle for
covalent attachment to silicone surfaces. We established a high-throughput
competitive assay based on mannoside-modified particles and flow-cytometry
to directly measure the binding affinity between the mannoside ligands
and fim+ E. coli 83972. We demonstrated that the
bacterial adhesion and biofilm formation were strongly correlated
to the binding affinity of the immobilized mannoside ligands. Mass
spectrometry based proteomic analysis indicated a substantial difference
in the proteome of the extracellular polymeric substance (EPS) secreted
by biofilms on different mannoside surfaces, which might be related
to the biofilm stability
Ultrasound-Augmented Multienzyme-like Nanozyme Hydrogel Spray for Promoting Diabetic Wound Healing
Treatment of diabetic foot ulcers (DFU) needs to reduce
inflammation,
relieve hypoxia, lower blood glucose, promote angiogenesis, and eliminate
pathogenic bacteria, but the therapeutic efficacy is greatly limited
by the diversity and synergy of drug functions as well as the DFU
microenvironment itself. Herein, an ultrasound-augmented multienzyme-like
nanozyme hydrogel spray was developed using hyaluronic acid encapsulated l-arginine and ultrasmall gold nanoparticles and Cu1.6O nanoparticles coloaded phosphorus doped graphitic carbon nitride
nanosheets (ACPCAH). This nanozyme hydrogel spray possesses five types
of enzyme-like activities, including superoxide dismutase (SOD)-,
catalase (CAT)-, glucose oxidase (GOx)-, peroxidase (POD)-, and nitric
oxide synthase (NOS)-like activities. The kinetics and reaction mechanism
of the sonodynamic/sonothermal synergistic enhancement of the SOD-CAT-GOx-POD/NOS
cascade reaction of ACPCAH are fully investigated. Both in vitro and
in vivo tests demonstrate that this nanozyme hydrogel spray can be
activated by the DFU microenvironment to reduce inflammation, relieve
hypoxia, lower blood glucose, promote angiogenesis, and eliminate
pathogenic bacteria, thus accelerating diabetic wound healing effectively.
This study highlights a competitive approach based on multienzyme-like
nanozymes for the development of all-in-one DFU therapies
Nonmetal Graphdiyne Nanozyme-Based Ferroptosis–Apoptosis Strategy for Colon Cancer Therapy
Ferroptosis–apoptosis,
a new modality of induced cell death
dependent on reactive oxygen species, has drawn tremendous attention
in the field of nanomedicine. A metal-free ferroptosis–apoptosis
inducer was reported based on boron and nitrogen codoped graphdiyne
(BN-GDY) that possesses efficient glutathione (GSH) depletion capability
and concurrently induces ferroptosis by deactivation of GSH-dependent
peroxidases 4 (GPX4) and apoptosis by downregulation of Bcl2. The
high catalytic activity of BN-GDY is explicated by both kinetic experiments
and density functional theory (DFT) calculations of Gibbs free energy
change during hydrogen peroxide (H2O2) decomposition.
In addition, a unique sequence Bi–Bi mechanism is discovered,
which is distinct from the commonly reported ping-pong Bi–Bi
mechanism of most peroxidase mimics and natural enzymes. We anticipate
that this nonmetal ferroptosis–apoptosis therapeutic concept
by carbon-based nanomaterials would provide proof-of-concept evidence
for nanocatalytic medicines in cancer therapy
Machine Learning Guided Discovery of Superoxide Dismutase Nanozymes for Androgenetic Alopecia
Androgenetic
alopecia (AGA) is a common form of hair loss, which
is mainly caused by oxidative stress induced dysregulation of hair
follicles (HF). Herein, a highly efficient manganese thiophosphite
(MnPS3) based superoxide dismutase (SOD) mimic was discovered
using machine learning (ML) tools. Remarkably, the IC50 of MnPS3 is 3.61 μg·mL–1, up to 12-fold lower than most reported SOD-like nanozymes. Moreover,
a MnPS3 microneedle patch (MnMNP) was constructed to treat
AGA that could diffuse into the deep skin where HFs exist and remove
excess reactive oxygen species. Compared with the widely used minoxidil,
MnMNP exhibits higher ability on hair regeneration, even at a reduced
frequency of application. This study not only provides a general guideline
for the accelerated discovery of SOD-like nanozymes by ML techniques,
but also shows a great potential as a next generation approach for
rational design of nanozymes
Extent of the Oxidative Side Reactions to Peptides and Proteins During the CuAAC Reaction
The
copper-catalyzed azide–alkyne cycloaddition (CuAAC)
reaction is a powerful tool for bioconjugation of biomolecules, particularly
proteins and peptides. The major drawback limiting the use of the
CuAAC reaction in biological systems is the copper-mediated formation
of reactive oxygen species (ROS), leading to the oxidative degradation
of proteins or peptides. From the studies on a limited number of proteins
and peptides, it is known that, in general, the copper mediated oxidative
damage is associated with the copper coordination environment and
solvent accessibility. However, there is a lack of data to help estimate
the extent of copper-mediated oxidation on a wide range of proteins
and peptides. To begin to address this need, we quantitatively measured
the degree of copper-mediated oxidation on libraries of 1200 tetrapeptides
and a model protein (bovine serum albumin, BSA) using liquid chromatography
mass spectrometry (LC-MS). The collected data will be useful to researchers
planning to use the CuAAC reaction for bioconjugaton on peptides or
proteins
Piezoelectric Activatable Nanozyme-Based Skin Patch for Rapid Wound Disinfection
Nanozymes
are promising new-generation antibacterial agents owing
to their low cost, high stability, broad-spectrum activity, and minimal
antimicrobial resistance. However, the inherent low catalytic activity
of nanozymes tends to limit their antibacterial efficacy. Herein,
a heterostructure of zinc oxide nanorod@graphdiyne nanosheets (ZnO@GDY
NR) with unparallel piezocatalytic enzyme mimic activity is reported,
which concurrently possesses intrinsic peroxidase-like activity and
strong piezoelectric responses and effectively promotes the decomposition
of hydrogen peroxide (H2O2) and generation of
reactive oxygen species under ultrasound irradiation. Moreover, this
piezocatalytic nanozyme exhibits almost 100% antibacterial efficacy
against multidrug-resistant pathogens involving methicillin-resistant Staphylococcus aureus and Pseudomonas
aeruginosa in vitro and in vivo. In addition, a piezoelectric
activatable nanozyme-based skin patch is developed for rapid skin
wound disinfections with satisfactory hemocompatibility and cytocompatibility.
This work not only sheds light on the development of an innovative
piezoelectric activatable nanozyme-based skin patch for rapid wound
disinfection but also provides new insights on the engineering of
piezocatalytic nanozymes for nanozyme antibacterial therapy
