10 research outputs found
The Role of Intravoxel Incoherent Motion MRI in Predicting Early Treatment Response to Chemoradiation for Metastatic Lymph Nodes in Nasopharyngeal Carcinoma
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Image_1_SOX13 is a novel prognostic biomarker and associates with immune infiltration in breast cancer.tif
BackgroundThe transcription factor, SOX13 is part of the SOX family. SOX proteins are crucial in the progression of many cancers, and some correlate with carcinogenesis. Nonetheless, the biological and clinical implications of SOX13 in human breast cancer (BC) remain rarely known.MethodsWe evaluated the survival and expression data of SOX13 in BC patients via the UNLCAL, GEPIA, TIMER, and Kaplan-Meier plotter databases. Immunohistochemistry (IHC) was used to verify clinical specimens. The gene alteration rates of SOX13 were acquired on the online web cBioportal. With the aid of the TCGA data, the association between SOX13 mRNA expression and copy number alterations (CNA) and methylation was determined. LinkedOmics was used to identify the genes that co-expressed with SOX13 and the regulators. Immune infiltration and tumor microenvironment evaluations were assessed by ImmuCellAI and TIMER2.0 databases. SOX13 correlated drug resistance analysis was performed using the GDSC2 database.ResultsHigher SOX13 expression was discovered in BC tissues in comparison to normal tissues. Moreover, increased gene mutation and amplification of SOX13 were found in BC. Patients with increased SOX13 expression levels showed worse overall survival (OS). Cox analysis showed that SOX13 independently served as a prognostic indicator for poor survival in BC. Further, the expression of SOX13 was also confirmed to be correlated with tumor microenvironment and diverse infiltration of immune cells. In terms of drug sensitivity analysis, we found higher expression level of SOX13 predicts a high IC50 value for most of 198 drugs which predicts drug resistance.ConclusionThe present findings demonstrated that high expression of SOX13 negatively relates to prognosis and SOX13 plays an important role in cancer immunity. Therefore, SOX13 may potentially be adopted as a biomarker for predicting BC prognosis and infiltration of immune cells.</p
Seasonality of active tuberculosis notification from 2005 to 2014 in Xinjiang, China - Fig 1
<p>Original time series and X-12-ARIMA seasonal decomposition of monthly notification of active TB in Xinjiang from 2005 to 2014: original series (A) with trend (B), seasonal component (C), and irregular component (D).</p
Distribution of active TB notification in Xinjiang from 2005 to 2014 (Unit: thousand).
<p>Distribution of active TB notification in Xinjiang from 2005 to 2014 (Unit: thousand).</p
Table_1_SOX13 is a novel prognostic biomarker and associates with immune infiltration in breast cancer.docx
BackgroundThe transcription factor, SOX13 is part of the SOX family. SOX proteins are crucial in the progression of many cancers, and some correlate with carcinogenesis. Nonetheless, the biological and clinical implications of SOX13 in human breast cancer (BC) remain rarely known.MethodsWe evaluated the survival and expression data of SOX13 in BC patients via the UNLCAL, GEPIA, TIMER, and Kaplan-Meier plotter databases. Immunohistochemistry (IHC) was used to verify clinical specimens. The gene alteration rates of SOX13 were acquired on the online web cBioportal. With the aid of the TCGA data, the association between SOX13 mRNA expression and copy number alterations (CNA) and methylation was determined. LinkedOmics was used to identify the genes that co-expressed with SOX13 and the regulators. Immune infiltration and tumor microenvironment evaluations were assessed by ImmuCellAI and TIMER2.0 databases. SOX13 correlated drug resistance analysis was performed using the GDSC2 database.ResultsHigher SOX13 expression was discovered in BC tissues in comparison to normal tissues. Moreover, increased gene mutation and amplification of SOX13 were found in BC. Patients with increased SOX13 expression levels showed worse overall survival (OS). Cox analysis showed that SOX13 independently served as a prognostic indicator for poor survival in BC. Further, the expression of SOX13 was also confirmed to be correlated with tumor microenvironment and diverse infiltration of immune cells. In terms of drug sensitivity analysis, we found higher expression level of SOX13 predicts a high IC50 value for most of 198 drugs which predicts drug resistance.ConclusionThe present findings demonstrated that high expression of SOX13 negatively relates to prognosis and SOX13 plays an important role in cancer immunity. Therefore, SOX13 may potentially be adopted as a biomarker for predicting BC prognosis and infiltration of immune cells.</p
Monthly notification of active TB in Xinjiang from 2005 to 2014.
<p>Monthly notification of active TB in Xinjiang from 2005 to 2014.</p
sj-pdf-1-ajs-10.1177_03635465231200246 ā Supplemental material for Native Glenoid Depth and Hill-Sachs Lesion Morphology in Traumatic Anterior Shoulder Instability
Supplemental material, sj-pdf-1-ajs-10.1177_03635465231200246 for Native Glenoid Depth and Hill-Sachs Lesion Morphology in Traumatic Anterior Shoulder Instability by Chenliang Wu, Beibei Liu, Caiqi Xu, Song Zhao, Yuehua Li, Junjie Xu and Jinzhong Zhao in The American Journal of Sports Medicine</p
A Hexanuclear Gadolinium(III)-Based Nanoprobe for Magnetic Resonance Imaging of Tumor Apoptosis
Magnetic resonance imaging (MRI) is instrumental in the
noninvasive
evaluation of tumor tissues in patients subjected to chemotherapy,
thereby yielding essential diagnostic data crucial for the prognosis
of tumors and the formulation of therapeutic strategies. Currently,
commercially available MRI contrast agents (CAs) predominantly consist
of mononuclear gadolinium(III) complexes. Because there is only one
Gd(III) atom per molecule, these CAs often require administration
in high doses to achieve the desired contrast quality, which inevitably
leads to some adverse events. Herein, we develop a six-nuclei, apoptosis-targeting T1 CA, Gd6āZnDPA nanoprobe,
which consists of a hexanuclear gadolinium nanocluster (Gd6) with an apoptosis-targeting group (ZnDPA). The amplification of
Gd(III) by the hexanuclear structure generates its high longitudinal
relaxivity (44.67 mMā1 sā1, 1T)
and low r1/r2 ratio (0.68, 1T). Based on the SolomonāBloembergenāMorgan
(SBM) theory, this notable improvement is primarily ascribed to a
long correlation tumbling time (ĻR). More importantly,
the Gd6āZnDPA nanoprobe shows excellent tumor apoptosis
properties with an enhanced MR signal ratio (ā¼74%) and a long
MRI imaging acquisition time window (ā¼48 h) in 4T1 tumor-bearing
mice. This study introduces an experimental gadolinium-based CA for
the potential imaging of tumor apoptosis in the context of MRI
Summary of the identification of the yellow catfish carrying disrupted <i>mstn</i>.
<p>Summary of the identification of the yellow catfish carrying disrupted <i>mstn</i>.</p
Zebrafish embryos can be used as an <i>in vivo</i> system to examine ZFN activity of editing yellow catfish <i>mstn</i> gene.
<p>(A) Schematic diagram shows ZFN1 binding to the yellow catfish <i>mstn</i> gene. Yellow catfish <i>mstn</i> exons are shown as boxes and its introns are shown as solid lines. Start codon (ATG) and stop codon (TGA) are marked in exon 1 and exon 3, respectively. Number above the exon box denotes the position of nucleotides in the gene <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0028897#pone.0028897-Pan1" target="_blank">[4]</a>. The ZFN1 binding site is in exon 1. The triplets of nucleotides recognized by ZFN1 fingers are marked in different colors. (B) Zebrafish embryos were used as an <i>in vivo</i> system to examine ZFN activity of editing yellow catfish <i>mstn</i> gene. The plasmid containing exon 1 of yellow catfish <i>mstn</i> gene (pGEM-ycMSTN) was co-microinjected with ZFN1 mRNA into zebrafish embryos at 1ā2-cell stage. The <i>mstn</i> molecules were amplified from the zebrafish embryos at 24 hpf and then subcloned for sequencing. Analyses on sequences of the molecules revealed that the molecules of disrupted <i>mstn</i> were categorized into three groups including deletions, insertions and complex. (C) ZFN1 cut <i>mstn</i> in yellow catfish genome. ZFN1 mRNA was microinjected into yellow catfish embryos at 1ā2-cell stage. The <i>mstn</i> molecules were amplified from the yellow catfish embryos at 72 hpf and then subcloned for sequencing. Analyses on sequences of the molecules revealed that the molecules of disrupted <i>mstn</i> in yellow catfish genome were categorized into three groups including deletions, insertion and complex. WT: partial sequence of wild type <i>mstn</i> containing ZFN1 targeting site (B, C). Number in the leftmost of the panels (B, C) shows the number of nucleotides was deleted (ā) or inserted (+) in the mutated <i>mstn</i> gene. Number in the bracket shows the frequency of the mutated molecules (B, C). Inserted nucleotides are bolded (B, C).</p