Transposable elements within TRIM DHS

This files showed the transposable elements that overlapped with TRIM haDHSs and conversed DHSs and their detailed information. The first three columns represented the position of DHS, the fourth to sixth columns represented the position of transposable elements. The annotation file of transposable elements came from ReapeatsMasker output file in UCSC

The motifs identified in TRIM haDHSs

Using the FIMO software to identified the putative transcription binding site motifs in TRIM haDHSs. And the corresponding six-primates sequences of these motifs were downloaed from Ensembl

Selection analysis of TRIM DHS

The TRIM DHS data was generated from 145 cell types DHS data in ENCODE. And the methodology of DHS selection analysis was based on our previous DHS research(Comprehensive identification and analysis of human accelerated regulatory DNA, Rachel et al.Genome Research)