24 research outputs found
Additional file 2: Table S2. of Rice Chloroplast Genome Variation Architecture and Phylogenetic Dissection in Diverse Oryza Species Assessed by Whole-Genome Resequencing
Location of all the SNPs and Indels and their gene region in the reference detected in this study. (XLSX 121 kb
Additional file 5: Table S4. of Rice Chloroplast Genome Variation Architecture and Phylogenetic Dissection in Diverse Oryza Species Assessed by Whole-Genome Resequencing
Overall Tajima’s D testing of the chloroplast genome in a 1kb bin. (XLSX 13 kb
Additional file 7: Table S5. of Rice Chloroplast Genome Variation Architecture and Phylogenetic Dissection in Diverse Oryza Species Assessed by Whole-Genome Resequencing
The 295 accessions information sequenced by ourselves and subpopulation designations used in this study. (DOCX 31 kb
Additional file 1: Table S1. of Rice Chloroplast Genome Variation Architecture and Phylogenetic Dissection in Diverse Oryza Species Assessed by Whole-Genome Resequencing
Summary of the 295 rice whole genome re-sequencing. (XLSX 30 kb
Additional file 4: Table S3. of Rice Chloroplast Genome Variation Architecture and Phylogenetic Dissection in Diverse Oryza Species Assessed by Whole-Genome Resequencing
Nucleotide diversity of the overall chloroplast genome with a 1000bp sliding window and 500bp step size. (XLSX 16 kb
Additional file 2: of Genome-wide association study of eating and cooking qualities in different subpopulations of rice (Oryza sativa L.)
Table S2. The sources of the rice varieties used in this study. (DOC 32 kb
Genome-wide Association Mapping of Polyphenol Contents and Antioxidant Capacity in Whole-Grain Rice
Whole grains contain
various bioactive phytochemicals including
phenolic acids, and consumption of whole grains may provide desirable
health benefits and reduce the risks of chronic diseases due to their
antioxidant activities. In this study, we qualified and quantified
9 bound phenolic compounds in 32 red and 88 white pericarp accessions
of rice. A genome-wide association study (GWAS) was conducted for
free (FP) and bound (BP) phenolic compounds and their antioxidant
capacities with high-quality single-nucleotide polymorphisms (SNPs)
in two colored grain panels and the whole panel. <i>Rc</i> was detected for all FP and antioxidant capacities in the whole
panel. Three loci (chr.1:30970095, chr.6:24392269, and chr.9:6670223)
for more than five phenolic-related traits, two loci (chr.4:34120529
and chr.11:28947480) for more than two FP-related traits, and one
locus (chr.11:23220681) for ferulic acid detected in two panels were
potentially new genes that are valuable for further gene cloning.
Overall, this study increases our understanding on the genetics of
phenolic acid biosynthesis in the phenylpropanoid pathway
Additional file 1 of Direct comparison of diagnostic and clinical values between Tc-99Â m DPD and Tc-99Â m PYP scintigraphy in patients with cardiac amyloidosis
Supplementary Material
The association study of salt tolerance index and candidate regions.
<p>Locus_pos: Physical distance from the transcription initiation site of the gene.</p><p>The association study of salt tolerance index and candidate regions.</p
EHH plot across the <i>BADH1</i> and <i>BADH2</i> genomic region.
<p>(a) EHH of <i>BADH1</i> genomic region. Wild type (T) and P11483 (A) did not show large LD block. (b) EHH of <i>BADH2</i> genomic region. The fragrant accessions carrying the P2<sub>3036</sub> (<i>badh2</i>.<i>1</i> which has 8 bp deletion in exon 7) allele exhibited a large block of extended LD around the FNP, while wild type allele declined rapidly.</p