Additional file 9: of Initiator tRNA genes template the 3′ CCA end at high frequencies in bacteria

Perl script to generate full data browser and iTol input. (TXT 18 kb

Additional file 12: of Initiator tRNA genes template the 3′ CCA end at high frequencies in bacteria

Web-browser based navigator of full dataset of results on frequencies of CCA-templating by tRNA functional class, organized by clades in NCBI taxonomy. (ZIP 548 kb

Additional file 2: of Initiator tRNA genes template the 3′ CCA end at high frequencies in bacteria

Structurally aligned data for subset of tRNAs with CAU anticodons, also containing TFAM scores with Silva model in “aligned FastA” format. (FAS 3 MB

Additional file 4: of Initiator tRNA genes template the 3′ CCA end at high frequencies in bacteria

Prokaryotic genome size data from NCBI, downloaded on October 26, 2015. (TXT 10 MB

Additional file 11: of Initiator tRNA genes template the 3′ CCA end at high frequencies in bacteria

Phylogenetic tree in New Hampshire format of NCBI taxon IDs from NCBI Taxonomy corresponding to addresses_v4.txt.gz (TXT 8 kb

Additional file 6: of Initiator tRNA genes template the 3′ CCA end at high frequencies in bacteria

Installation code-base for the TFAM program. (ZIP 819 kb

Additional file 5: of Initiator tRNA genes template the 3′ CCA end at high frequencies in bacteria

NCBI taxonomy data required by compute_heatmap.pl (GZ 14 MB

Additional file 12: of Initiator tRNA genes template the 3′ CCA end at high frequencies in bacteria

Web-browser based navigator of full dataset of results on frequencies of CCA-templating by tRNA functional class, organized by clades in NCBI taxonomy. (ZIP 548 kb

Additional file 3: of Initiator tRNA genes template the 3′ CCA end at high frequencies in bacteria

Expanded description of each additional file with usage. (TXT 3 kb

Additional file 7: of Initiator tRNA genes template the 3′ CCA end at high frequencies in bacteria

TFAM model used to reannotate tRNA functions in COVE format. To use this model file with TFAM, give its name as an option argument to the “-m” option. (TXT 1 MB