Haplotype diversity, nucleotide diversity of different ploidy populations of <i>S</i>. <i>spontaneum</i> according to rDNA-ITS haplotype data.

Haplotype diversity, nucleotide diversity of different ploidy populations of S. spontaneum according to rDNA-ITS haplotype data.</p

The GC content analysis of composition of ITS sequence of different ploidy populations of <i>S</i>. <i>spontaneum</i>.

<p>The GC content analysis of composition of ITS sequence of different ploidy populations of <i>S</i>. <i>spontaneum</i>.</p

Molecular variance (AMOVA) analysis among different ploidy populations according to rDNA-ITS haplotype data.

<p>Molecular variance (AMOVA) analysis among different ploidy populations according to rDNA-ITS haplotype data.</p

The list of clones of <i>S</i>. <i>spontaneum</i> used in this study.

<p>The list of clones of <i>S</i>. <i>spontaneum</i> used in this study.</p

Molecular variance (AMOVA) analysis among different ploidy populations according to rDNA-ITS haplotype data.

Molecular variance (AMOVA) analysis among different ploidy populations according to rDNA-ITS haplotype data.</p

The list of control rDNA-ITS sequences.

<p>The list of control rDNA-ITS sequences.</p

Pairwise Gst (above the diagonal) and Nm (below the diagonal) among different ploidy populations according to rDNA-ITS data.

<p>Pairwise Gst (above the diagonal) and Nm (below the diagonal) among different ploidy populations according to rDNA-ITS data.</p

Additional File 1:

Table S1. Genes whose genomic alterations associated with drug sensitivity (Mann–Whitney U test, adjusted p < 0.1)

The ML and NJ phylogenetic tree based on rDNA-ITS haplotype data of different polyploid clones of <i>S</i>. <i>spontaneum</i>.

<p>The ML and NJ phylogenetic tree based on rDNA-ITS haplotype data of different polyploid clones of <i>S</i>. <i>spontaneum</i>.</p

The T test of genetic distance difference between inter-population and intra-population obtained using Kimura 2-parameter model.

<p>The T test of genetic distance difference between inter-population and intra-population obtained using Kimura 2-parameter model.</p