Additional file 2 of Chromatin accessibility illuminates single-cell regulatory dynamics of rice root tips

Additional file 2: Table S2: Marker genes of each cluster. Table S3: ACRs of each cluster for Normal and HS. Table S4: List of genes with open chromatin accessibility but low/no expression. Table S5: List of genes with close chromatin accessibility but high expression. Table S6: List of overlapped marker genes between scRNA-seq and scATAC-seq. Table S7: List of GO terms for genes associated with cluster specific ACRs. Table S8: ACRs and corresponding genes detected in the bulk ATAC-seq experiment for Normal. Table S9: ACRs and corresponding genes detected in the bulk ATAC-seq experiment for HS

Additional file 1 of Chromatin accessibility illuminates single-cell regulatory dynamics of rice root tips

Additional file 1: Figure S1. Isolation and purification of nuclei from rice root tips. Figure S2. Evaluation and quality control of rice scATAC-seq. Figure S3. Example of cluster-enriched chromatin accessibility and surrounding genes, and in situ hybridization of sense probe. Figure S4. Correlation between scATAC-seq and scRNA-seq. Figure S5. Heatmap showing enrichment of TF motifs. Figure S6. TFs and motif enrichment at ACRs in rice root. Figure S7. Pseudotime heatmap ordering from epidermis to root hair. Figure S8. Violin plot showing chromatin accessibility changes in genes related to “jasmonic acid biosynthetic process”. Table S1: Sequencing statistics

Additional file 3 of Chromatin accessibility illuminates single-cell regulatory dynamics of rice root tips

Additional file 3: Table S10: Enriched TF motifs in differential ACRs upon heat stress for each cluster. (XLS 403 kb