Additional file 5: of Identification of recombination events in outbred species with next-generation sequencing data

Excel Sheets CS-B35–2, CS-C25–3, CS-C3–2, CS-C32–2, CS-C5–3, CS-3-12, CS-3-14, CS-3-15, CS-3-16 and CS-3-18 Crossover tracts on each chromosome of the maternal P. simonii that were identified in each progeny. Excel Sheet S7 Summary of the crossover numbers on the male chromosomes that were identified in each progeny. Excel Sheet S8 Summary of the crossover events on the male chromosomes that were identified within a short haplotype block region. (XLSX 58 kb

Additional file 1: of Identification of recombination events in outbred species with next-generation sequencing data

Table S1. Summary of parental blocks from the intermediate files of ‘parent1.abxaa.5snps.blocks’, ‘parent2.aaxab.5snps.blocks’, ‘parent1.long.haplotype’ and ‘parent2.long.haplotype’, created by findGCO. Table S2. The number of SNPs contained in the long parental haplotypes from the intermediate files of ‘parent1.long. Haplotype’ and ‘parent2.long.haplotype’ created by findGCO. Table S3. Distribution of the number of gene conversion events detected in each of the 10 progeny and inherited from the male parent based on the reference genome sequences. Figure S1. CO patterns identified in each progeny on all chromosomes in the female parent P. deltoides. Figure S2. CO patterns identified in each progeny on all chromosomes in the male parent P. simonii. (DOCX 277 kb

Additional file 4: of Identification of recombination events in outbred species with next-generation sequencing data

Excel Sheets CD-B35–2, CD-C25–3, CD-C3–2, CD-C32–2, CD-C5–3, CD-3-12, CD-3-14, CD-3-15, CD-3-16 and CD-3-18 Crossover tracts on each chromosome of the maternal P. deltoides that were identified in each progeny. Excel Sheet S5 Summary of the crossover numbers on the female chromosomes that were identified in each progeny. Excel Sheet S6 Summary of the crossover events on the female chromosomes that were identified within a short haplotype block region. (XLSX 72 kb

Additional file 2: of Identification of recombination events in outbred species with next-generation sequencing data

Excel Sheets RD-B35–2, RD-C25–3, RD-C3–2, RD-C32–2, RD-C5–3, RD-3-12, RD-3-14, RD-3-15, RD-3-16 and RD-3-18 Distribution of the number of recombination events over fragment length, which occurred in the meiosis of the female P. deltoides and were identified in each of the 10 progeny. Excel Sheet S1 Distribution of the average number of recombination events over fragment length, which occurred in the meiosis of the female P. deltoides and were identified in the 10 progeny. Excel Sheet S2 Summary of the number and the total length of haplotype blocks in which the maternal recombination events were identified in each progeny. (XLSX 29 kb

Additional file 3: of Identification of recombination events in outbred species with next-generation sequencing data

Excel Sheets RS-B35–2, RS-C25–3, RS-C3–2, RS-C32–2, RS-C5–3, RS-3-12, RS-3-14, RS-3-15, RS-3-16 and RS-3-18 Distribution of the number of recombination events over fragment length, which occurred in the meiosis of the male P. simonii and were identified in each of the 10 progeny. Excel Sheet S3 Distribution of the average number of recombination events over fragment length, which occurred in the meiosis of the male P. simonii and were identified in the 10 progeny. Excel Sheet S4 Summary of the number and the total length of haplotype blocks in which the paternal recombination events were identified in each progeny. (XLSX 29 kb

Direct Asymmetric Allylic Alkenylation of <i>N</i>‑Itaconimides with Morita–Baylis–Hillman Carbonates

The asymmetric allylic alkenylation of Morita–Baylis–Hillman (MBH) carbonates with <i>N</i>-itaconimides as nucleophiles has been developed using a commercially available <i>Cinchona</i> alkaloid catalyst. A variety of multifunctional chiral α-methylene-β-maleimide esters were attained in moderate to excellent yields (up to 99%) and good to excellent enantioselectivities (up to 91% <i>ee</i>). The origin of the regio- and stereoselectivity was verified by DFT methods. Calculated geometries and relative energies of various transition states strongly support the observed regio- and enantioselectivity

Highly Enantio- and Diastereoselective Allylic Alkylation of Morita–Baylis–Hillman Carbonates with Allyl Ketones

The asymmetric allylic alkylation of Morita–Baylis–Hillman (MBH) carbonates with allyl ketones has been developed. The α-regioselective alkylation adducts, containing a hexa-1,5-diene framework with important synthetic value, were achieved in up to 83% yield, >99% <i>ee</i>, and 50:1 dr by using a commercially available <i>Cinchona</i> alkaloid as the catalyst. From the allylic alkylation adduct, a cyclohexene bearing two adjacent chiral centers was readily prepared

Highly Enantio- and Diastereoselective Allylic Alkylation of Morita–Baylis–Hillman Carbonates with Allyl Ketones

The asymmetric allylic alkylation of Morita–Baylis–Hillman (MBH) carbonates with allyl ketones has been developed. The α-regioselective alkylation adducts, containing a hexa-1,5-diene framework with important synthetic value, were achieved in up to 83% yield, >99% <i>ee</i>, and 50:1 dr by using a commercially available <i>Cinchona</i> alkaloid as the catalyst. From the allylic alkylation adduct, a cyclohexene bearing two adjacent chiral centers was readily prepared