EFFICIENT PATTERNS OF CONSERVATION ACTIVITIES IN A WATERSHED: THE CASE OF THE GRANDE RONDE RIVER, OREGON

This research examines a spatially explicit allocation of habitat restoration activities in an Oregon watershed to meet water temperature targets for the benefit of endangered salmonid fish species. Integrating hydrological, biological and economic models, a series of optimization problems are investigated for different policy targets including temperature reductions and enhanced fish populations. Results indicated that the heterogeneous nature of riparian conditions and stream morphology needs to be considered if restoration activities are to be allocated efficiently in a watershed. We also found that it is less costly to implement restoration activities in tributaries if the objective is to maximize stream length where water temperatures decrease by a certain degree. Although temperature reductions are primarily achieved by shading in nearby reaches, if a desired level of temperature reductions increases, then it is necessary to apply restoration efforts in remote reaches.Resource /Energy Economics and Policy,

Our Sun. IV. The Standard Model and Helioseismology: Consequences of Uncertainties in Input Physics and in Observed Solar Parameters

Helioseismology provides a powerful tool to explore the deep interior of the Sun: for example, the adiabatic sound speed can be inferred with an accuracy of a few parts in 10,000. This has become a serious challenge to theoretical models of the Sun. Therefore, we have undertaken a self-consistent, systematic study of sources of uncertainties in the standard solar model, which must be understood before the helioseismic observations can be used as constraints on theory. We find that the largest uncertainty in the sound speed in the solar interior, namely, 3 parts in 1000, arises from uncertainties in the observed photospheric abundances of the elements; uncertainties of 1 part in 1000 arise from (1) the 4% uncertainty in the OPAL opacities, (2) the 5% uncertainty in the basic pp nuclear reaction rate, (3) the 15% uncertainty in the diffusion constants for the gravitational settling of helium, and (4) the 50% uncertainties in diffusion constants for the heavier elements. (Other investigators have shown that similar uncertainties arise from uncertainties in the interior equation of state and in rotation-induced turbulent mixing.) The predicted pre-main-sequence solar lithium depletion is a factor of order 20 (an order of magnitude larger than that predicted by earlier models that neglected gravitational settling and used older opacities), and is uncertain by a factor of 2. The predicted neutrino capture rate is uncertain by 30% for the Cl-37 experiment and by 3% for the Ga-71 experiments (not including uncertainties in the capture cross sections), while the B-8 neutrino flux is uncertain by 30%.Comment: LaTeX, 38 pages (including 8 figures); ApJ, in press. Added figures/color figurea available at http://www.cita.utoronto.ca/~boothroy/sun4.htm

Genome-Wide Association Study Identifies Loci for Liver Enzyme Concentrations in Mexican Americans: The GUARDIAN Consortium.

ObjectivePopulations of Mexican American ancestry are at an increased risk for nonalcoholic fatty liver disease. The objective of this study was to determine whether loci in known and novel genes were associated with variation in aspartate aminotransferase (AST) (n = 3,644), alanine aminotransferase (ALT) (n = 3,595), and gamma-glutamyl transferase (GGT) (n = 1,577) levels by conducting the first genome-wide association study (GWAS) of liver enzymes, which commonly measure liver function, in individuals of Mexican American ancestry.MethodsLevels of AST, ALT, and GGT were determined by enzymatic colorimetric assays. A multi-cohort GWAS of individuals of Mexican American ancestry was performed. Single-nucleotide polymorphisms (SNP) were tested for association with liver outcomes by multivariable linear regression using an additive genetic model. Association analyses were conducted separately in each cohort, followed by a nonparametric meta-analysis.ResultsIn the PNPLA3 gene, rs4823173 (P = 3.44 × 10-10 ), rs2896019 (P = 7.29 × 10-9 ), and rs2281135 (P = 8.73 × 10-9 ) were significantly associated with AST levels. Although not genome-wide significant, these same SNPs were the top hits for ALT (P = 7.12 × 10-8 , P = 1.98 × 10-7 , and P = 1.81 × 10-7 , respectively). The strong correlation (r2  = 1.0) for these SNPs indicated a single hit in the PNPLA3 gene. No genome-wide significant associations were found for GGT.ConclusionsPNPLA3, a locus previously identified with ALT, AST, and nonalcoholic fatty liver disease in European and Japanese GWAS, is also associated with liver enzymes in populations of Mexican American ancestry

Small Scale Magnetic Flux Emergence Observed with Hinode/Solar Optical Telescope

We observed small scale magnetic flux emergence in a sunspot moat region by the Solar Optical Telescope (SOT) aboard the Hinode satellite. We analyzed filtergram images observed in the wavelengths of Fe 6302 angstrom, G-band and Ca II H. In Stokes I images of Fe 6302 angstrom, emerging magnetic flux were recognized as dark lanes. In G-band, they showed their shapes almost the same as in Stokes I images. These magnetic flux appeared as dark filaments in Ca II H images. Stokes V images of Fe 6302 angstrom showed pairs of opposite polarities at footpoints of each filament. These magnetic concentrations are identified to correspond to bright points in G-band/Ca II H images. From the analysis of time-sliced diagrams, we derived following properties of emerging flux, which are consistent with the previous works. (1) Two footpoints separate each other at a speed of 4.2 km/s during the initial phase of evolution and decreases to about 1 km/s in 10 minutes later. (2) Ca II H filaments appear almost simultaneously with the formation of dark lanes in Stokes I in the observational cadence of 2 minutes. (3) The lifetime of the dark lanes in Stokes I and G-band is 8 minutes, while that of Ca filament is 12 minutes. An interesting phenomena was observed that an emerging flux tube expands laterally in the photosphere with a speed of 3.8 km/s. Discussion on the horizontal expansion of flux tube will be given with refernce to previous simulation studies.Comment: 6 pages, 9 figures, accepted for publication in PASJ (Hinode Special Issue

Defending the genome from the enemy within:mechanisms of retrotransposon suppression in the mouse germline

The viability of any species requires that the genome is kept stable as it is transmitted from generation to generation by the germ cells. One of the challenges to transgenerational genome stability is the potential mutagenic activity of transposable genetic elements, particularly retrotransposons. There are many different types of retrotransposon in mammalian genomes, and these target different points in germline development to amplify and integrate into new genomic locations. Germ cells, and their pluripotent developmental precursors, have evolved a variety of genome defence mechanisms that suppress retrotransposon activity and maintain genome stability across the generations. Here, we review recent advances in understanding how retrotransposon activity is suppressed in the mammalian germline, how genes involved in germline genome defence mechanisms are regulated, and the consequences of mutating these genome defence genes for the developing germline

Mass Splitting and Production of Σc0\Sigma_c^0 and Σc++\Sigma_c^{++} Measured in 500GeV500 {GeV} π−−\pi^- -N Interactions

From a sample of $2722 \pm 78$ $\Lambda_c^+$ decaying to the $pK^-\pi^+$ final state, we have observed, in the hadroproduction experiment E791 at Fermilab, $143 \pm 20$ $\Sigma_c^0$ and $122 \pm 18$ $\Sigma_c^{++}$ through their decays to $\Lambda_c^+ \pi^{\pm}$. The mass difference $M(\Sigma_c^0) - M(\Lambda_c^+$) is measured to be $(167.38\pm 0.29\pm 0.15) {MeV}$; for $M(\Sigma_c^{++}) - M(\Lambda_c^+)$, we find $(167.76\pm 0.29\pm0.15) {MeV}$. The rate of $\Lambda_c^+$ production from decays of the $\Sigma_c$ triplet is (22\pm 2\pm 3) {%} of the total $\Lambda_c^+$ production assuming equal rate of production from all three, as measured for $\Sigma_c^0$ and $\Sigma_c^{++}$. We do not observe a statistically significant $\Sigma_c$ baryon-antibaryon production asymmetry. The $x_F$ and $p_t^2$ spectra of $\Lambda_c^+$ from $\Sigma_c$ decays are observed to be similar to those for all $\Lambda_c^+$'s produced.Comment: 15 pages, uuencoded postscript 3 figures uuencoded, tar-compressed fil

Probing the Disk-jet Connection of the Radio Galaxy 3C120 Observed with Suzaku

Broad line radio galaxies (BLRGs) are a rare type of radio-loud AGN, in which the broad optical permitted emission lines have been detected in addition to the extended jet emission. Here we report on deep (40ksec x4) observations of the bright BLRG 3C~120 using Suzaku. The observations were spaced a week apart, and sample a range of continuum fluxes. An excellent broadband spectrum was obtained over two decades of frequency (0.6 to 50 keV) within each 40 ksec exposure. We clearly resolved the iron K emission line complex, finding that it consists of a narrow K_a core (sigma ~ 110 eV or an EW of 60 eV), a 6.9 keV line, and an underlying broad iron line. Our confirmation of the broad line contrasts with the XMM-Newton observation in 2003, where the broad line was not required. The most natural interpretation of the broad line is iron K line emission from a face-on accretion disk which is truncated at ~10 r_g. Above 10 keV, a relatively weak Compton hump was detected (reflection fraction of R ~ 0.6), superposed on the primary X-ray continuum of Gamma ~ 1.75. Thanks to the good photon statistics and low background of the Suzaku data, we clearly confirm the spectral evolution of 3C120, whereby the variability amplitude decreases with increasing energy. More strikingly, we discovered that the variability is caused by a steep power-law component of Gamma ~2.7, possibly related to the non-thermal jet emission. We discuss our findings in the context of similarities and differences between radio-loud/quiet objects

The state of the Martian climate

60°N was +2.0°C, relative to the 1981–2010 average value (Fig. 5.1). This marks a new high for the record. The average annual surface air temperature (SAT) anomaly for 2016 for land stations north of starting in 1900, and is a significant increase over the previous highest value of +1.2°C, which was observed in 2007, 2011, and 2015. Average global annual temperatures also showed record values in 2015 and 2016. Currently, the Arctic is warming at more than twice the rate of lower latitudes