4 research outputs found

    original introgress results

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    7-zip archive containing the original simulation results from introgress; (introgress.RData, sim.introgress.RData, introgress.test.l.locus.RData) to use it copy the contents to /R/introgres

    Original AFLP data matrix

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    this file has the following structure: - data for individuals are in rows, and loci are in columns - additionally, there are two columns in the beginning giving the population (pop), and species (species) of each individual; pop is either the population identifier [aga1 = aga-1, aga3 = aga-3, hyb1 = hyb-1, hyb2 = hyb-2, pha1 = pha-1, pha3 = pha-3] or indicates individuals repeated for error estimation [con (control) = individuals repeated on each plate, with A-E as part of the identifier indicating the plate; test = individuals repeated on a different plate] - the last row (quality) gives an indication of the peak quality for each locus (separation from other peaks, clarity of peak) [A - very good, B - good, C - bad, X - extremely bad; intermediate categories, e.g. A-B for between A and B are used as well; generally A and B are good for use

    original Structure results

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    7-zip archive containing the results from the structure runs for the original data; to use copy to /R/structure/result
    corecore